Fariselli, Piero
Fariselli, Piero
Dipartimento di Biomedicina Comparata e Alimentazione - BCA
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
2024 Jain, Shantanu; Bakolitsa, Constantina; E Brenner, Steven; Radivojac, Predrag; Moult, John; Repo, Susanna; A Hoskins, Roger; Andreoletti, Gaia; Barsky, Daniel; Chellapan, Ajithavalli; Chu, Hoyin; Dabbiru, Navya; K Kollipara, Naveen; Ly, Melissa; J Neumann, Andrew; R Pal, Lipika; Odell, Eric; Pandey, Gaurav; C Peters-Petrulewicz, Robin; Srinivasan, Rajgopal; F Yee, Stephen; Jyothsna Yeleswarapu, Sri; Zuhl, Maya; Adebali, Ogun; Patra, Ayoti; A Beer, Michael; Hosur, Raghavendra; Peng, Jian; M Bernard, Brady; Berry, Michael; Dong, Shengcheng; P Boyle, Alan; Adhikari, Aashish; Chen, Jingqi; Hu, Zhiqiang; Wang, Robert; Wang, Yaqiong; Miller, Maximilian; Wang, Yanran; Bromberg, Yana; Turina, Paola; Capriotti, Emidio; J Han, James; Ozturk, Kivilcim; Carter, Hannah; Babbi, Giulia; Bovo, Samuele; Di Lena, Pietro; Luigi Martelli, Pier; Savojardo, Castrense; Casadio, Rita; S Cline, Melissa; De Baets, Greet; Bonache, Sandra; Díez, Orland; Gutiérrez-Enríquez, Sara; Fernández, Alejandro; Montalban, Gemma; Ootes, Lars; Özkan, Selen; Padilla, Natàlia; Riera, Casandra; De la Cruz, Xavier; Diekhans, Mark; J Huwe, Peter; Wei, Qiong; Xu, Qifang; L Dunbrack, Roland; Gotea, Valer; Elnitski, Laura; Margolin, Gennady; Fariselli, Piero; V Kulakovskiy, Ivan; J Makeev, Vsevolod; D Penzar, Dmitry; E Vorontsov, Ilya; V Favorov, Alexander; R Forman, Julia; Hasenahuer, Marcia; S Fornasari, Maria; Parisi, Gustavo; Avsec, Ziga; H Çelik, Muhammed; Yen Duong Nguyen, Thi; Gagneur, Julien; Shi, Fang-Yuan; D Edwards, Matthew; Guo, Yuchun; Tian, Kevin; Zeng, Haoyang; K Gifford, David; Göke, Jonathan; Zaucha, Jan; Gough, Julian; S Ritchie, Graham R; Frankish, Adam; M Mudge, Jonathan; Harrow, Jennifer; L Young, Erin; Yu, Yao; D Huff, Chad; Murakami, Katsuhiko; Nagai, Yoko; Imanishi, Tadashi; J Mungall, Christopher; B Jacobsen, Julius O; Kim, Dongsup; Jeong, Chan-Seok; T Jones, David; Jun Li, Mulin; Beleva Guthrie, Violeta; Bhattacharya, Rohit; Chen, Yun-Ching; Douville, Christopher; Fan, Jean; Kim, Dewey; Masica, David; Niknafs, Noushin; Sengupta, Sohini; Tokheim, Collin; N Turner, Tychele; Ting Grace Yeo, Hui; Karchin, Rachel; Shin, Sunyoung; Welch, Rene; Keles, Sunduz; Li, Yue; Kellis, Manolis; Corbi-Verge, Carles; V Strokach, Alexey; M Kim, Philip; E Klein, Teri; Mohan, Rahul; A Sinnott-Armstrong, Nicholas; Wainberg, Michael; Kundaje, Anshul; Gonzaludo, Nina; Y Mak, Angel C; Chhibber, Aparna; K Lam, Hugo Y; Dahary, Dvir; Fishilevich, Simon; Lancet, Doron; Lee, Insuk; Bachman, Benjamin; Katsonis, Panagiotis; C Lua, Rhonald; J Wilson, Stephen; Lichtarge, Olivier; R Bhat, Rajendra; Sundaram, Laksshman; Viswanath, Vivek; Bellazzi, Riccardo; Nicora, Giovanna; Rizzo, Ettore; Limongelli, Ivan; M Mezlini, Aziz; Chang, Ray; Kim, Serra; Lai, Carmen; O'Connor, Robert; Topper, Scott; van den Akker, Jeroen; Y Zhou, Alicia; D Zimmer, Anjali; Mishne, Gilad; R Bergquist, Timothy; R Breese, Marcus; F Guerrero, Rafael; Jiang, Yuxiang; Kiga, Nikki; Li, Biao; Mort, Matthew; A Pagel, Kymberleigh; Pejaver, Vikas; H Stamboulian, Moses; Thusberg, Janita; D Mooney, Sean; Teerakulkittipong, Nuttinee; Cao, Chen; Kundu, Kunal; Yin, Yizhou; Yu, Chen-Hsin; Kleyman, Michael; Lin, Chiao-Feng; Stackpole, Mary; M Mount, Stephen; Eraslan, Gökcen; S Mueller, Nikola; Naito, Tatsuhiko; R Rao, Aliz; R Azaria, Johnathan; Brodie, Aharon; Ofran, Yanay; Garg, Aditi; Pal, Debnath; Hawkins-Hooker, Alex; Kenlay, Henry; Reid, John; J Mucaki, Eliseos; K Rogan, Peter; M Schwarz, Jana; B Searls, David; Rie Lee, Gyu; Seok, Chaok; Krämer, Andreas; Shah, Sohela; V Huang, Chenglai; F Kirsch, Jack; Shatsky, Maxim; Cao, Yue; Chen, Haoran; Karimi, Mostafa; Moronfoye, Oluwaseyi; Sun, Yuanfei; Shen, Yang; Shigeta, Ron; T Ford, Colby; Nodzak, Conor; Uppal, Aneeta; Shi, Xinghua; Joseph, Thomas; Kotte, Sujatha; Rana, Sadhna; Rao, Aditya; G Saipradeep, V; Sivadasan, Naveen; Sunderam, Uma; Stanke, Mario; Su, Andrew; Adzhubey, Ivan; M Jordan, Daniel; Sunyaev, Shamil; Rousseau, Frederic; Schymkowitz, Joost; Van Durme, Joost; V Tavtigian, Sean; Carraro, Marco; Giollo, Manuel; Tosatto, Silvio; Adato, Orit; Carmel, Liran; E Cohen, Noa; Fenesh, Tzila; Holtzer, Tamar; Juven-Gershon, Tamar; Unger, Ron; Niroula, Abhishek; Olatubosun, Ayodeji; Väliaho, Jouni; Yang, Yang; Vihinen, Mauno; E Wahl, Mary; Chang, Billy; Chun Chong, Ka; Hu, Inchi; Sun, Rui; Ka Kei Wu, William; Xia, Xiaoxuan; C Zee, Benny; H Wang, Maggie; Wang, Meng; Wu, Chunlei; Lu, Yutong; Chen, Ken; Yang, Yuedong; M Yates, Christopher; Kreimer, Anat; Yan, Zhongxia; Yosef, Nir; Zhao, Huying; Wei, Zhipeng; Yao, Zhaomin; Zhou, Fengfeng; Folkman, Lukas; Zhou, Yaoqi; Daneshjou, Roxana; B Altman, Russ; Inoue, Fumitaka; Ahituv, Nadav; P Arkin, Adam; Lovisa, Federica; Bonvini, Paolo; Bowdin, Sarah; Gianni, Stefano; Mantuano, Elide; Minicozzi, Velia; Novak, Leonore; Pasquo, Alessandra; Pastore, Annalisa; Petrosino, Maria; Puglisi, Rita; Toto, Angelo; Veneziano, Liana; Chiaraluce, Roberta; P Ball, Mad; R Bobe, Jason; M Church, George; Consalvi, Valerio; N Cooper, David; A Buckley, Bethany; B Sheridan, Molly; R Cutting, Garry; Chiara Scaini, Maria; J Cygan, Kamil; M Fredericks, Alger; T Glidden, David; Neil, Christopher; L Rhine, Christy; G Fairbrother, William; Y Alontaga, Aileen; W Fenton, Aron; A Matreyek, Kenneth; M Starita, Lea; M Fowler, Douglas; Löscher, Britt-Sabina; Franke, Andre; I Adamson, Scott; R Graveley, Brenton; W Gray, Joe; J Malloy, Mary; P Kane, John; Kousi, Maria; Katsanis, Nicholas; Schubach, Max; Kircher, Martin; Y Mak, Angel C; F Tang, Paul L; Kwok, Pui-Yan; H Lathrop, Richard; T Clark, Wyatt; K Yu, Guoying; H LeBowitz, Jonathan; Benedicenti, Francesco; Bettella, Elisa; Bigoni, Stefania; Cesca, Federica; Mammi, Isabella; Marino-Buslje, Cristina; Milani, Donatella; Peron, Angela; Polli, Roberta; Sartori, Stefano; Stanzial, Franco; Toldo, Irene; Turolla, Licia; C Aspromonte, Maria; Bellini, Mariagrazia; Leonardi, Emanuela; Liu, Xiaoming; Marshall, Christian; Richard McCombie, W; Elefanti, Lisa; Menin, Chiara; Stephen Meyn, M; Murgia, Alessandra; Y Nadeau, Kari C; L Neuhausen, Susan; L Nussbaum, Robert; Pirooznia, Mehdi; B Potash, James; F Dimster-Denk, Dago; D Rine, Jasper; R Sanford, Jeremy; Snyder, Michael; G Cote, Atina; Sun, Song; W Verby, Marta; Weile, Jochen; P Roth, Frederick; Tewhey, Ryan; C Sabeti, Pardis; Campagna, Joan; M Refaat, Marwan; Wojciak, Julianne; Grubb, Soren; Schmitt, Nicole; Shendure, Jay; B Spurdle, Amanda; J Stavropoulos, Dimitri; A Walton, Nephi; P Zandi, Peter; Ziv, Elad; Burke, Wylie; Chen, Flavia; R Carr, Lawrence; Martinez, Selena; Paik, Jodi; Harris-Wai, Julie; Yarborough, Mark; M Fullerton, Stephanie; A Koenig, Barbara; Mcinnes, Gregory; Shigaki, Dustin; Chandonia, John-Marc; Furutsuki, Mabel; Kasak, Laura; Yu, Changhua; Chen, Rui; Friedberg, Iddo; A Getz, Gad; Cong, Qian; N Kinch, Lisa; Zhang, Jing; V Grishin, Nick; Voskanian, Alin; G Kann, Maricel; Tran, Elizabeth; M Ioannidis, Nilah; M Hunter, Jesse; Udani, Rupa; Cai, Binghuang; A Morgan, Alexander; Sokolov, Artem; M Stuart, Joshua; Minervini, Giovanni; Monzon, Alexander Miguel; Batzoglou, Serafim; J Butte, Atul; S Greenblatt, Marc; K Hart, Reece; Hernandez, Ryan; P Hubbard, Tim J; Kahn, Scott; O'Donnell-Luria, Anne; C Ng, Pauline; Shon, John; Veltman, Joris; M Zook, Justin
Preventing illegal seafood trade using machine-learning assisted microbiome analysis
2024 Peruzza, Luca; Cicala, Francesco; Milan, Massimo; Rovere, Giulia Dalla; Patarnello, Tomaso; Boffo, Luciano; Smits, Morgan; Iori, Silvia; De Bortoli, Angelo; Schiavon, Federica; Zentilin, Aurelio; Fariselli, Piero; Cardazzo, Barbara; Bargelloni, Luca
Treatment of in-stent restenosis with ultrathin-strut versus thin-strut drug-eluting stents or drug-eluting balloons: a multicentre registry
2024 De Filippo, Ovidio; Wańha, Wojciech; Sanavia, Tiziana; Januszek, Rafal; Giacobbe, Federico; Campo, Gianluca; Pinxterhuis, Tineke H; Capodanno, Davide; Tomasiewicz, Brunon; Iannaccone, Mario; Leone, Attilio; Wolny, Rafał; Bruno, Francesco; Patti, Giuseppe; Musumeci, Giuseppe; Liccardo, Gaetano; Verardi, Roberto; Roubin, Sergio Raposeiras; Tarantini, Giuseppe; Kuźma, Łukasz; Perl, Leor; Gagnor, Andrea; Reczuch, Krzysztof; Conrotto, Federico; Tuttolomondo, Domenico; Ploumen, Eline H; Niezgoda, Piotr; Caglioni, Serena; Omedè, Pierluigi; Greco, Antonio; Kubica, Jacek; Gil, Robert J; Piccolo, Raffaele; Kornowski, Ran; Bil, Jacek; Morena, Arianna; Zocca, Paolo; Pennone, Mauro; Gąsior, Mariusz; Jaguszewski, Miłosz; Von Birgelen, Clemens; Fariselli, Piero; De Ferrari, Gaetano M; Wojakowski, Wojciech; D'Ascenzo, Fabrizio
Artificial intelligence and statistical methods for stratification and prediction of progression in amyotrophic lateral sclerosis: A systematic review
2023 Tavazzi, E.; Longato, E.; Vettoretti, M.; Aidos, H.; Trescato, I.; Roversi, C.; Martins, A. S.; Castanho, E. N.; Branco, R.; Soares, D. F.; Guazzo, A.; Birolo, G.; Pala, D.; Bosoni, P.; Chio, A.; Manera, U.; de Carvalho, M.; Miranda, B.; Gromicho, M.; Alves, I.; Bellazzi, R.; Dagliati, A.; Fariselli, P.; Madeira, S. C.; Di Camillo, B.
The genomic landscape of canine diffuse large B-cell lymphoma identifies distinct subtypes with clinical and therapeutic implications
2022 Giannuzzi, Diana; Marconato, Laura; Fanelli, Antonella; Licenziato, Luca; De Maria, Raffaella; Rinaldi, Andrea; Rotta, Luca; Rouquet, Nicole; Birolo, Giovanni; Fariselli, Piero; Mensah, Afua A; Bertoni, Francesco; Aresu, Luca
DOME: recommendations for supervised machine learning validation in biology
2021 Walsh, I.; Fishman, D.; Garcia-Gasulla, D.; Titma, T.; Pollastri, G.; Capriotti, E.; Casadio, R.; Capella-Gutierrez, S.; Cirillo, D.; Del Conte, A.; Dimopoulos, A. C.; Del Angel, V. D.; Dopazo, J.; Fariselli, P.; Fernandez, J. M.; Huber, F.; Kreshuk, A.; Lenaerts, T.; Martelli, P. L.; Navarro, A.; Broin, P. O.; Pinero, J.; Piovesan, D.; Reczko, M.; Ronzano, F.; Satagopam, V.; Savojardo, C.; Spiwok, V.; Tangaro, M. A.; Tartari, G.; Salgado, D.; Valencia, A.; Zambelli, F.; Harrow, J.; Psomopoulos, F. E.; Tosatto, S. C. E.
DNA sequence symmetries from randomness: the origin of the Chargaff's second parity rule
2020 Fariselli, Piero; Taccioli, Cristian; Pagani, Luca; Maritan, Amos
Fido-SNP: the first webserver for scoring the impact of single nucleotide variants in the dog genome
2019 Capriotti, E.; Montanucci, L.; Profiti, G.; Rossi, I.; Giannuzzi, D.; Aresu, L.; Fariselli, P.
Longitudinal transcriptomic and genetic landscape of radiotherapy response in canine melanoma
2019 Giannuzzi, Diana; Marconato, Laura; Elgendy, RAMY ELGENDY IBRAHIM MOHAMED; Ferraresso, Serena; Scarselli, Elisa; Fariselli, Piero; Nicosia, Alfredo; Pegolo, Sara; Leoni, Guido; Laganga, Paola; Ferdinando, Leone Vito; Giantin, Mery; Troise, Fulvia; Dacasto, Mauro; Aresu, Luca
Tracing seafood at high spatial resolution using NGS-generated data and machine learning: Comparing microbiome versus SNPs
2019 Milan, Massimo; Maroso, Francesco; DALLA ROVERE, Giulia; Carraro, Lisa; Ferraresso, Serena; Patarnello, Tomaso; Bargelloni, Luca; Cardazzo, Barbara; Fariselli, Piero
Analysis of hard protein corona composition on selective iron oxide nanoparticles by MALDI-TOF mass spectrometry: identification and amplification of a hidden mastitis biomarker in milk proteome
2018 Magro, Massimiliano; Zaccarin, Mattia; Miotto, Giovanni; Da Dalt, Laura; Baratella, Davide; Fariselli, Piero; Gabai, Gianfranco; Vianello, Fabio; DA DALT, Liviana
BUSCA: An integrative web server to predict subcellular localization of proteins
2018 Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Profiti, Giuseppe; Casadio, Rita
DeepSig: Deep learning improves signal peptide detection in proteins
2018 Savojardo, Castrense; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita
Microbiota and environmental stress: how pollution affects microbial communities in Manila clams
2018 Milan, M.; Carraro, L.; Fariselli, P.; Martino, M. E.; Cavalieri, D.; Vitali, F.; Boffo, L.; Patarnello, T.; Bargelloni, L.; Cardazzo, B.
Signature of Pareto optimization in the Escherichia coli proteome
2018 Kocillari, Loren; Fariselli, Piero; Trovato, Antonio; Seno, Flavio; Maritan, Amos
Synergistic toxicity of some sulfonamide mixtures on Daphnia magna
2018 DE LIGUORO, Marco; Alessia, Riga; Fariselli, Piero
Blind prediction of deleterious amino acid variations with SNPs&GO
2017 Capriotti, Emidio; Martelli, Pier Luigi; Fariselli, Piero; Casadio, Rita
ISPRED4: Interaction Sites PREDiction in protein structures with a refining grammar model
2017 Savojardo, Castrense; Fariselli, Piero; Luigi Martelli, Pier; Casadio, Rita
Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI
2017 Carraro, Marco; Minervini, Giovanni; Giollo, Manuel; Bromberg, Yana; Capriotti, Emidio; Casadio, Rita; Dunbrack, Roland; Elefanti, Lisa; Fariselli, Piero; Ferrari, Carlo; Gough, Julian; Katsonis, Panagiotis; Leonardi, Emanuela; Lichtarge, Olivier; Menin, Chiara; Martelli, Pier Luigi; Niroula, Abhishek; Pal, Lipika R; Repo, Susanna; Scaini, Maria Chiara; Vihinen, Mauno; Wei, Qiong; Xu, Qifang; Yang, Yuedong; Yin, Yizhou; Zaucha, Jan; Zhao, Huiying; Zhou, Yaoqi; Brenner, Steven E; Moult, John; Tosatto, Silvio
PhD-SNPg: a webserver and lightweight tool for scoring single nucleotide variants
2017 Capriotti, Emidio; Fariselli, Piero