QUAGLIA, FEDERICA
QUAGLIA, FEDERICA
Dipartimento di Scienze Biomediche - DSB
APICURON: A database to credit and acknowledge the work of biocurators
2021 Hatos, A.; Quaglia, F.; Piovesan, D.; Tosatto, S. C. E.
Assessing predictors for new post translational modification sites: A case study on hydroxylation
2020 Piovesan, D.; Hatos, A.; Minervini, G.; Quaglia, F.; Monzon, A. M.; Tosatto, S. C. E.
Characterization of the pVHL Interactome in Human Testis Using High-Throughput Library Screening
2022 Falconieri, A.; Minervini, G.; Quaglia, F.; Sartori, G.; Tosatto, S. C. E.
Computational analysis of prolyl hydroxylase domain-containing protein 2 (PHD2) mutations promoting polycythemia insurgence in humans
2016 Minervini, Giovanni; Quaglia, Federica; Tosatto, Silvio
Conference report: Biocuration 2021 Virtual Conference
2021 Quaglia, F.; Balakrishnan, R.; Bello, S. M.; Vasilevsky, N.
Critical assessment of protein intrinsic disorder prediction
2021 Necci, M.; Piovesan, D.; Hoque, M. T.; Walsh, I.; Iqbal, S.; Vendruscolo, M.; Sormanni, P.; Wang, C.; Raimondi, D.; Sharma, R.; Zhou, Y.; Litfin, T.; Galzitskaya, O. V.; Lobanov, M. Y.; Vranken, W.; Wallner, B.; Mirabello, C.; Malhis, N.; Dosztanyi, Z.; Erdos, G.; Meszaros, B.; Gao, J.; Wang, K.; Hu, G.; Wu, Z.; Sharma, A.; Hanson, J.; Paliwal, K.; Callebaut, I.; Bitard-Feildel, T.; Orlando, G.; Peng, Z.; Xu, J.; Wang, S.; Jones, D. T.; Cozzetto, D.; Meng, F.; Yan, J.; Gsponer, J.; Cheng, J.; Wu, T.; Kurgan, L.; Promponas, V. J.; Tamana, S.; Marino-Buslje, C.; Martinez-Perez, E.; Chasapi, A.; Ouzounis, C.; Dunker, A. K.; Kajava, A. V.; Leclercq, J. Y.; Aykac-Fas, B.; Lambrughi, M.; Maiani, E.; Papaleo, E.; Chemes, L. B.; Alvarez, L.; Gonzalez-Foutel, N. S.; Iglesias, V.; Pujols, J.; Ventura, S.; Palopoli, N.; Benitez, G. I.; Parisi, G.; Bassot, C.; Elofsson, A.; Govindarajan, S.; Lamb, J.; Salvatore, M.; Hatos, A.; Monzon, A. M.; Bevilacqua, M.; Micetic, I.; Minervini, G.; Paladin, L.; Quaglia, F.; Leonardi, E.; Davey, N.; Horvath, T.; Kovacs, O. P.; Murvai, N.; Pancsa, R.; Schad, E.; Szabo, B.; Tantos, A.; Macedo-Ribeiro, S.; Manso, J. A.; Pereira, P. J. B.; Davidovic, R.; Veljkovic, N.; Hajdu-Soltesz, B.; Pajkos, M.; Szaniszlo, T.; Guharoy, M.; Lazar, T.; Macossay-Castillo, M.; Tompa, P.; Tosatto, S. C. E.
Databases for intrinsically disordered proteins
2022 Piovesan, Damiano; Monzon, Alexander Miguel; Quaglia, Federica; Tosatto, Silvio C. E.
DisProt 7.0: A major update of the database of disordered proteins
2017 Piovesan, Damiano; Tabaro, Francesco; Micetic, Ivan; Necci, Marco; Quaglia, Federica; Oldfield, Christopher J.; Aspromonte, Maria Cristina; Davey, Norman E.; Davidović, Radoslav; Dosztányi, Zsuzsanna; Elofsson, Arne; Gasparini, Alessandra; Hatos, András; Kajava, Andrey V.; Kalmar, Lajos; Leonardi, Emanuela; Lazar, Tamas; Macedo Ribeiro, Sandra; Macossay Castillo, Mauricio; Meszaros, Attila; Minervini, Giovanni; Murvai, Nikoletta; Pujols, Jordi; Roche, Daniel B.; Salladini, Edoardo; Schad, Eva; Schramm, Antoine; Szabo, Beata; Tantos, Agnes; Tonello, Fiorella; Tsirigos, Konstantinos D.; Veljković, Nevena; Ventura, Salvador; Vranken, Wim; Warholm, Per; Uversky, Vladimir N.; Dunker, A. Keith; Longhi, Sonia; Tompa, Peter; Tosatto, Silvio
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
2022 Quaglia, Federica; Mészáros, Bálint; Salladini, Edoardo; Hatos, András; Pancsa, Rita; Chemes, Lucía B; Pajkos, Mátyás; Lazar, Tamas; Peña-Díaz, Samuel; Santos, Jaime; Ács, Veronika; Farahi, Nazanin; Fichó, Erzsébet; Aspromonte, Maria Cristina; Bassot, Claudio; Chasapi, Anastasia; Davey, Norman E; Davidović, Radoslav; Dobson, Laszlo; Elofsson, Arne; Erdős, Gábor; Gaudet, Pascale; Giglio, Michelle; Glavina, Juliana; Iserte, Javier; Iglesias, Valentín; Kálmán, Zsófia; Lambrughi, Matteo; Leonardi, Emanuela; Longhi, Sonia; Macedo-Ribeiro, Sandra; Maiani, Emiliano; Marchetti, Julia; Marino-Buslje, Cristina; Mészáros, Attila; Monzon, Alexander Miguel; Minervini, Giovanni; Nadendla, Suvarna; Nilsson, Juliet F; Novotný, Marian; Ouzounis, Christos A; Palopoli, Nicolás; Papaleo, Elena; Pereira, Pedro José Barbosa; Pozzati, Gabriele; Promponas, Vasilis J; Pujols, Jordi; Rocha, Alma Carolina Sanchez; Salas, Martin; Sawicki, Luciana Rodriguez; Schad, Eva; Shenoy, Aditi; Szaniszló, Tamás; Tsirigos, Konstantinos D; Veljkovic, Nevena; Parisi, Gustavo; Ventura, Salvador; Dosztányi, Zsuzsanna; Tompa, Peter; Tosatto, Silvio C E; Piovesan, Damiano
DisProt: intrinsic protein disorder annotation in 2020
2019 Hatos, András; Hajdu-Soltész, Borbála; Monzon, Alexander M; Palopoli, Nicolas; Álvarez, Lucía; Aykac-Fas, Burcu; Bassot, Claudio; Benítez, Guillermo I; Bevilacqua, Martina; Chasapi, Anastasia; Chemes, Lucia; Davey, Norman E; Davidović, Radoslav; Dunker, A Keith; Elofsson, Arne; Gobeill, Julien; Foutel, Nicolás S González; Sudha, Govindarajan; Guharoy, Mainak; Horvath, Tamas; Iglesias, Valentin; Kajava, Andrey V; Kovacs, Orsolya P; Lamb, John; Lambrughi, Matteo; Lazar, Tamas; Leclercq, Jeremy Y; Leonardi, Emanuela; Macedo-Ribeiro, Sandra; Macossay-Castillo, Mauricio; Maiani, Emiliano; Manso, José A; Marino-Buslje, Cristina; Martínez-Pérez, Elizabeth; Mészáros, Bálint; Mičetić, Ivan; Minervini, Giovanni; Murvai, Nikoletta; Necci, Marco; Ouzounis, Christos A; Pajkos, Mátyás; Paladin, Lisanna; Pancsa, Rita; Papaleo, Elena; Parisi, Gustavo; Pasche, Emilie; Barbosa Pereira, Pedro J; Promponas, Vasilis J; Pujols, Jordi; Quaglia, Federica; Ruch, Patrick; Salvatore, Marco; Schad, Eva; Szabo, Beata; Szaniszló, Tamás; Tamana, Stella; Tantos, Agnes; Veljkovic, Nevena; Ventura, Salvador; Vranken, Wim; Dosztányi, Zsuzsanna; Tompa, Peter; Tosatto, Silvio C E; Piovesan, Damiano
ECO: the Evidence and Conclusion Ontology, an update for 2022
2022 Nadendla, Suvarna; Jackson, Rebecca; Munro, James; Quaglia, Federica; Mészáros, Bálint; Olley, Dustin; Hobbs, Elizabeth T; Goralski, Stephen M; Chibucos, Marcus; Mungall, Christopher John; Tosatto, Silvio C E; Erill, Ivan; Giglio, Michelle G
Experimentally determined long intrinsically disordered protein regions are now abundant in the protein data bank
2020 Monzon, A. M.; Necci, M.; Quaglia, F.; Walsh, I.; Zanotti, G.; Piovesan, D.; Tosatto, S. C. E.
Exploring Curated Conformational Ensembles of Intrinsically Disordered Proteins in the Protein Ensemble Database
2021 Quaglia, F.; Lazar, T.; Hatos, A.; Tompa, P.; Piovesan, D.; Tosatto, S. C. E.
Exploring Manually Curated Annotations of Intrinsically Disordered Proteins with DisProt
2020 Quaglia, Federica; Hatos, András; Piovesan, Damiano; Tosatto, Silvio C E
Genotype-phenotype relations of the von Hippel-Lindau tumor suppressor inferred from a large-scale analysis of disease mutations and interactors
2019 Minervini, Giovanni; Quaglia, Federica; Tabaro, Francesco; Tosatto, Silvio C E
Insights into the molecular features of the von Hippel–Lindau-like protein
2019 Minervini, G.; Quaglia, F.; Tabaro, F.; Tosatto, S. C. E.
Insights into the proline hydroxylase (PHD) family, molecular evolution and its impact on human health
2015 Minervini, Giovanni; Quaglia, Federica; Tosatto, Silvio
MobiDB: intrinsically disordered proteins in 2021
2021 Piovesan, Damiano; Necci, Marco; Escobedo, Nahuel; Monzon, Alexander Miguel; Hatos, András; Mičetić, Ivan; Quaglia, Federica; Paladin, Lisanna; Ramasamy, Pathmanaban; Dosztányi, Zsuzsanna; Vranken, Wim F; Davey, Norman E; Parisi, Gustavo; Fuxreiter, Monika; Tosatto, Silvio C E
PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins
2021 Lazar, Tamas; Martínez-Pérez, Elizabeth; Quaglia, Federica; Hatos, András; Chemes, Lucía B; Iserte, Javier A; Méndez, Nicolás A; Garrone, Nicolás A; Saldaño, Tadeo E; Marchetti, Julia; Rueda, Ana Julia Velez; Bernadó, Pau; Blackledge, Martin; Cordeiro, Tiago N; Fagerberg, Eric; Forman-Kay, Julie D; Fornasari, Maria S; Gibson, Toby J; Gomes, Gregory-Neal W; Gradinaru, Claudiu C; Head-Gordon, Teresa; Jensen, Malene Ringkjøbing; Lemke, Edward A; Longhi, Sonia; Marino-Buslje, Cristina; Minervini, Giovanni; Mittag, Tanja; Monzon, Alexander Miguel; Pappu, Rohit V; Parisi, Gustavo; Ricard-Blum, Sylvie; Ruff, Kiersten M; Salladini, Edoardo; Skepö, Marie; Svergun, Dmitri; Vallet, Sylvain D; Varadi, Mihaly; Tompa, Peter; Tosatto, Silvio C E; Piovesan, Damiano
SARS-CoV-2 variants preferentially emerge at intrinsically disordered protein sites helping immune evasion
2022 Quaglia, F.; Salladini, E.; Carraro, M.; Minervini, G.; Tosatto, S. C. E.; Le Mercier, P.