NECCI, MARCO
NECCI, MARCO
Dipartimento di Scienze Biomediche - DSB
A comprehensive assessment of long intrinsic protein disorder from the DisProt database
2018 Necci, Marco; Piovesan, Damiano; Dosztányi, Zsuzsanna; Tompa, Peter; Tosatto, Silvio C. E.
A novel approach to investigate the evolution of structured tandem repeat protein families by exon duplication
2020 Paladin, L.; Necci, M.; Piovesan, D.; Mier, P.; Andrade-Navarro, M. A.; Tosatto, S. C. E.
An intrinsically disordered proteins community for elixir [version 1; peer review: 2 approved]
2019 Davey, N. E.; Babu, M. M.; Blackledge, M.; Bridge, A.; Capella-Gutierrez, S.; Dosztanyi, Z.; Drysdale, R.; Edwards, R. J.; Elofsson, A.; Felli, I. C.; Gibson, T. J.; Gutmanas, A.; Hancock, J. M.; Harrow, J.; Higgins, D.; Jeffries, C. M.; Le Mercier, P.; Meszaros, B.; Necci, M.; Notredame, C.; Orchard, S.; Ouzounis, C. A.; Pancsa, R.; Papaleo, E.; Pierattelli, R.; Piovesan, D.; Promponas, V. J.; Ruch, P.; Rustici, G.; Romero, P.; Sarntivijai, S.; Saunders, G.; Schuler, B.; Sharan, M.; Shields, D. C.; Sussman, J. L.; Tedds, J. A.; Tompa, P.; Turewicz, M.; Vondrasek, J.; Vranken, W. F.; Wallace, B. A.; Wichapong, K.; Tosatto, S. C. E.
Critical assessment of protein intrinsic disorder prediction
2021 Necci, M.; Piovesan, D.; Hoque, M. T.; Walsh, I.; Iqbal, S.; Vendruscolo, M.; Sormanni, P.; Wang, C.; Raimondi, D.; Sharma, R.; Zhou, Y.; Litfin, T.; Galzitskaya, O. V.; Lobanov, M. Y.; Vranken, W.; Wallner, B.; Mirabello, C.; Malhis, N.; Dosztanyi, Z.; Erdos, G.; Meszaros, B.; Gao, J.; Wang, K.; Hu, G.; Wu, Z.; Sharma, A.; Hanson, J.; Paliwal, K.; Callebaut, I.; Bitard-Feildel, T.; Orlando, G.; Peng, Z.; Xu, J.; Wang, S.; Jones, D. T.; Cozzetto, D.; Meng, F.; Yan, J.; Gsponer, J.; Cheng, J.; Wu, T.; Kurgan, L.; Promponas, V. J.; Tamana, S.; Marino-Buslje, C.; Martinez-Perez, E.; Chasapi, A.; Ouzounis, C.; Dunker, A. K.; Kajava, A. V.; Leclercq, J. Y.; Aykac-Fas, B.; Lambrughi, M.; Maiani, E.; Papaleo, E.; Chemes, L. B.; Alvarez, L.; Gonzalez-Foutel, N. S.; Iglesias, V.; Pujols, J.; Ventura, S.; Palopoli, N.; Benitez, G. I.; Parisi, G.; Bassot, C.; Elofsson, A.; Govindarajan, S.; Lamb, J.; Salvatore, M.; Hatos, A.; Monzon, A. M.; Bevilacqua, M.; Micetic, I.; Minervini, G.; Paladin, L.; Quaglia, F.; Leonardi, E.; Davey, N.; Horvath, T.; Kovacs, O. P.; Murvai, N.; Pancsa, R.; Schad, E.; Szabo, B.; Tantos, A.; Macedo-Ribeiro, S.; Manso, J. A.; Pereira, P. J. B.; Davidovic, R.; Veljkovic, N.; Hajdu-Soltesz, B.; Pajkos, M.; Szaniszlo, T.; Guharoy, M.; Lazar, T.; Macossay-Castillo, M.; Tompa, P.; Tosatto, S. C. E.
DisProt 7.0: A major update of the database of disordered proteins
2017 Piovesan, Damiano; Tabaro, Francesco; Micetic, Ivan; Necci, Marco; Quaglia, Federica; Oldfield, Christopher J.; Aspromonte, Maria Cristina; Davey, Norman E.; Davidović, Radoslav; Dosztányi, Zsuzsanna; Elofsson, Arne; Gasparini, Alessandra; Hatos, András; Kajava, Andrey V.; Kalmar, Lajos; Leonardi, Emanuela; Lazar, Tamas; Macedo Ribeiro, Sandra; Macossay Castillo, Mauricio; Meszaros, Attila; Minervini, Giovanni; Murvai, Nikoletta; Pujols, Jordi; Roche, Daniel B.; Salladini, Edoardo; Schad, Eva; Schramm, Antoine; Szabo, Beata; Tantos, Agnes; Tonello, Fiorella; Tsirigos, Konstantinos D.; Veljković, Nevena; Ventura, Salvador; Vranken, Wim; Warholm, Per; Uversky, Vladimir N.; Dunker, A. Keith; Longhi, Sonia; Tompa, Peter; Tosatto, Silvio
DisProt: intrinsic protein disorder annotation in 2020
2019 Hatos, András; Hajdu-Soltész, Borbála; Monzon, Alexander M; Palopoli, Nicolas; Álvarez, Lucía; Aykac-Fas, Burcu; Bassot, Claudio; Benítez, Guillermo I; Bevilacqua, Martina; Chasapi, Anastasia; Chemes, Lucia; Davey, Norman E; Davidović, Radoslav; Dunker, A Keith; Elofsson, Arne; Gobeill, Julien; Foutel, Nicolás S González; Sudha, Govindarajan; Guharoy, Mainak; Horvath, Tamas; Iglesias, Valentin; Kajava, Andrey V; Kovacs, Orsolya P; Lamb, John; Lambrughi, Matteo; Lazar, Tamas; Leclercq, Jeremy Y; Leonardi, Emanuela; Macedo-Ribeiro, Sandra; Macossay-Castillo, Mauricio; Maiani, Emiliano; Manso, José A; Marino-Buslje, Cristina; Martínez-Pérez, Elizabeth; Mészáros, Bálint; Mičetić, Ivan; Minervini, Giovanni; Murvai, Nikoletta; Necci, Marco; Ouzounis, Christos A; Pajkos, Mátyás; Paladin, Lisanna; Pancsa, Rita; Papaleo, Elena; Parisi, Gustavo; Pasche, Emilie; Barbosa Pereira, Pedro J; Promponas, Vasilis J; Pujols, Jordi; Quaglia, Federica; Ruch, Patrick; Salvatore, Marco; Schad, Eva; Szabo, Beata; Szaniszló, Tamás; Tamana, Stella; Tantos, Agnes; Veljkovic, Nevena; Ventura, Salvador; Vranken, Wim; Dosztányi, Zsuzsanna; Tompa, Peter; Tosatto, Silvio C E; Piovesan, Damiano
Experimentally determined long intrinsically disordered protein regions are now abundant in the protein data bank
2020 Monzon, A. M.; Necci, M.; Quaglia, F.; Walsh, I.; Zanotti, G.; Piovesan, D.; Tosatto, S. C. E.
Exploring protein intrinsic disorder with mobidb
2020 Monzon, A. M.; Hatos, A.; Necci, M.; Piovesan, D.; Tosatto, S. C. E.
FLIPPER: Predicting and Characterizing Linear Interacting Peptides in the Protein Data Bank
2021 Monzon, A. M.; Bonato, P.; Necci, M.; Tosatto, S. C. E.; Piovesan, D.
InterPro in 2017-beyond protein family and domain annotations
2017 Finn, Robert D; Attwood, Teresa K.; Babbitt, Patricia C.; Bateman, Alex; Bork, Peer; Bridge, Alan J.; Chang, Hsin Yu; Dosztanyi, Zsuzsanna; El Gebali, Sara; Fraser, Matthew; Gough, Julian; Haft, David; Holliday, Gemma L.; Huang, Hongzhan; Huang, Xiaosong; Letunic, Ivica; Lopez, Rodrigo; Lu, Shennan; Marchler Bauer, Aron; Mi, Huaiyu; Mistry, Jaina; Natale, Darren A.; Necci, Marco; Nuka, Gift; Orengo, Christine A.; Park, Youngmi; Pesseat, Sebastien; Piovesan, Damiano; Potter, Simon C.; Rawlings, Neil D.; Redaschi, Nicole; Richardson, Lorna; Rivoire, Catherine; Sangrador Vegas, Amaia; Sigrist, Christian; Sillitoe, Ian; Smithers, Ben; Squizzato, Silvano; Sutton, Granger; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio; Wu, Cathy H.; Xenarios, Ioannis; Yeh, Lai Su; Young, Siew Yit; Mitchell, Alex L.
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
2019 Mitchell, Alex L.; Attwood, Teresa K.; Babbitt, Patricia C.; Blum, Matthias; Bork, Peer; Bridge, Alan; Brown, Shoshana D.; Chang, Hsin-Yu; El-Gebali, Sara; Fraser, Matthew I.; Gough, Julian; Haft, David R.; Huang, Hongzhan; Letunic, Ivica; Lopez, Rodrigo; Luciani, Aurélien; Madeira, Fabio; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Necci, Marco; Nuka, Gift; Orengo, Christine; Pandurangan, Arun P.; Paysan-Lafosse, Typhaine; Pesseat, Sebastien; Potter, Simon C.; Qureshi, Matloob A.; Rawlings, Neil D.; Redaschi, Nicole; Richardson, Lorna J.; Rivoire, Catherine; Salazar, Gustavo A.; Sangrador-Vegas, Amaia; Sigrist, Christian J A; Sillitoe, Ian; Sutton, Granger G.; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C E; Yong, Siew-Yit; Finn, Robert D.
Large-scale analysis of intrinsic disorder flavors and associated functions in the protein sequence universe
2016 Necci, Marco; Piovesan, Damiano; Tosatto, Silvio
MobiDB 3.0: More annotations for intrinsic disorder, conformational diversity and interactions in proteins
2018 Piovesan, Damiano; Tabaro, Francesco; Paladin, Lisanna; Necci, Marco; Micetic, Ivan; Camilloni, Carlo; Davey, Norman; Dosztányi, Zsuzsanna; Mészáros, Bálint; Monzon, Alexander M; Parisi, Gustavo; Schad, Eva; Sormanni, Pietro; Tompa, Peter; Vendruscolo, Michele; Vranken, Wim F; Tosatto, Silvio C. E.
MobiDB-lite 3.0: Fast consensus annotation of intrinsic disorder flavors in proteins
2020 Necci, M.; Piovesan, D.; Clementel, D.; Dosztanyi, Z.; Tosatto, S. C. E.
MobiDB-lite: Fast and highly specific consensus prediction of intrinsic disorder in proteins
2017 Necci, Marco; Piovesan, Damiano; Dosztányi, Zsuzsanna; Tosatto, Silvio
PhytoTypeDB: a database of plant protein inter-cultivar variability and function
2018 Necci, Marco; Piovesan, Damiano; Micheletti, Diego; Paladin, Lisanna; Cestaro, Alessandro; Tosatto, Silvio C E
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins
2020 Jarnot, P.; Ziemska-Legiecka, J.; Dobson, L.; Merski, M.; Mier, P.; Andrade-Navarro, M. A.; Hancock, J. M.; Dosztanyi, Z.; Paladin, L.; Necci, M.; Piovesan, D.; Tosatto, S. C. E.; Promponas, V. J.; Grynberg, M.; Gruca, A.
RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures
2021 Paladin, Lisanna; Bevilacqua, Martina; Errigo, Sara; Piovesan, Damiano; Mičetić, Ivan; Necci, Marco; Monzon, Alexander Miguel; Fabre, Maria Laura; Lopez, Jose Luis; Nilsson, Juliet F; Rios, Javier; Menna, Pablo Lorenzano; Cabrera, Maia; Buitron, Martin Gonzalez; Kulik, Mariane Gonçalves; Fernandez-Alberti, Sebastian; Fornasari, Maria Silvina; Parisi, Gustavo; Lagares, Antonio; Hirsh, Layla; Andrade-Navarro, Miguel A; Kajava, Andrey V; Tosatto, Silvio C E
The InterPro protein families and domains database: 20 years on
2021 Blum, Matthias; Chang, Hsin-Yu; Chuguransky, Sara; Grego, Tiago; Kandasaamy, Swaathi; Mitchell, Alex; Nuka, Gift; Paysan-Lafosse, Typhaine; Qureshi, Matloob; Raj, Shriya; Richardson, Lorna; Salazar, Gustavo A; Williams, Lowri; Bork, Peer; Bridge, Alan; Gough, Julian; Haft, Daniel H; Letunic, Ivica; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A; Necci, Marco; Orengo, Christine A; Pandurangan, Arun P; Rivoire, Catherine; Sigrist, Christian J A; Sillitoe, Ian; Thanki, Narmada; Thomas, Paul D; Tosatto, Silvio C E; Wu, Cathy H; Bateman, Alex; Finn, Robert D
Where differences resemble: sequence-feature analysis in curated databases of intrinsically disordered proteins
2018 Necci, Marco; Piovesan, Damiano; Tosatto, Silvio C E