CAPPELLATO, MARCO
CAPPELLATO, MARCO
Università di Padova
An agent-based simulator for microbial communities’ evolution
2022 Bellato, Massimo; Cappellato, Marco; Calzavara, Andrea; Rebecca, Sara; Lucchiari, Alessandro; DI CAMILLO, Barbara
Comprehensive assessment of microbiome differential abundance tools
2021 Cappellato, M.; Baruzzo, G.; DI CAMILLO, Barbara
Comprehensive benchmarking of differential abundance methods in microbiome data
2023 Cappellato, Marco; Baruzzo, Giacomo; DI CAMILLO, Barbara
Differential Abundance analysis of microbiome data: which tool and how to choose it?
2022 Cappellato, Marco; Baruzzo, Giacomo; DI CAMILLO, Barbara
Discriminative power of DNA-based, volatilome, near infrared spectroscopy, elements and stable isotopes methods for the origin authentication of typical Italian mountain cheese using sPLS-DA modeling
2024 Cardin, Marco; Mounier, Jérôme; Coton, Emmanuel; Cardazzo, Barbara; Perini, Matteo; Bertoldi, Daniela; Pianezze, Silvia; Segato, Severino; DI CAMILLO, Barbara; Cappellato, Marco; Coton, Monika; Carraro, Lisa; Currò, Sarah; Lucchini, Rosaria; Mohammadpour, Hooriyeh; Novelli, Enrico
Evaluation of differential abundance and network inference methods for microbiota sequencing data
2023 Cappellato, Marco
From microbial community model to interaction networks
2022 Rossato, A.; Cappellato, M.; Nikoloska, N.; Baruzzo, G.; Di Camillo, B.
Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data
2020 Tanevski, Jovan; Nguyen, Thin; Truong, Buu; Karaiskos, Nikos; Eren Ahsen, Mehmet; Zhang, Xinyu; Shu, Chang; Xu, Ke; Liang, Xiaoyu; Hu, Ying; VV Pham, Hoang; Xiaomei, Li; D Le, Thuc; L Tarca, Adi; Bhatti, Gaurav; Romero, Roberto; Karathanasis, Nestoras; Loher, Phillipe; Chen, Yang; Ouyang, Zhengqing; Mao, Disheng; Zhang, Yuping; Zand, Maryam; Ruan, Jianhua; Hafemeister, Christoph; Qiu, Peng; Tran, Duc; Nguyen, Tin; Gabor, Attila; Yu, Thomas; Guinney, Justin; Glaab, Enrico; Krause, Roland; Banda, Peter; SCTC Consortium, Dream; Baruzzo, Giacomo; Cappellato, Marco; Zorzan, Irene; DEL FAVERO, Simone; Schenato, Luca; Vandin, Fabio; DI CAMILLO, Barbara; Gupta, Shruti; Kumar Verma, Ajay; Ahmad, Shandar; Sharma, Ronesh; Vans, Edwin; Sharma, Alok; Patil, Ashwini; Carrea, Alejandra; Alonso, Andres M.; Diambra, Luis; Narsapuram, Vijay; Kaikala, Vinay; Potnuru, Chaitanyam; Kumar, Sunil; Peng, Jiajie; Wang, Xiaoyu; Shang, Xuequn; Livne, Dani; Snir, Tom; Philip, Hagit; Zilberberg, Alona; Efroni, Sol; Reza Hassanzadeh, Hamid; Hassanzadeh, Reihaneh; Jahanshahi, Ghazal; Naddaf-Sh, M-Mahdi; Drayer, Phillip M.; Naddaf-Sh, Sadra; Ben Guebila, Marouen; Wan, Changlin; Cao, Yuchen; Meamardoost, Saber; Papili Gao, Nan; Gunawan, Rudiyanto; Stolovitzky, Gustavo; Rajewsky, Nikolaus; Saez-Rodriguez, Julio; Meyer, Pablo
Implementation of a Python simulator for microbial communities evolution via agent-based modeling
2022 Bellato, Massimo; Calzavara, Andrea; Cappellato, Marco; DI CAMILLO, Barbara
Investigating differential abundance methods in microbiome data: a benchmark study
2021 Cappellato, Marco; Baruzzo, Giacomo; DI CAMILLO, Barbara
Investigating differential abundance methods in microbiome data: A benchmark study
2022 Cappellato, Marco; Baruzzo, Giacomo; Di Camillo, Barbara
Machine learning-based feature selection to search stable microbial biomarkers: application to inflammatory bowel disease
2022 Lee, Youngro; Cappellato, Marco; Di Camillo, Barbara
Modeling Microbial Community Networks: Methods and Tools
2021 Cappellato, Marco; Baruzzo, Giacomo; Patuzzi, Ilaria; DI CAMILLO, Barbara
Results and lessons learned from the sbv IMPROVER metagenomics diagnostics for inflammatory bowel disease challenge
2023 Khachatryan, Lusine; Xiang, Yang; Ivanov, Artem; Glaab, Enrico; Graham, Garrett; Granata, Ilaria; Giordano, Maurizio; Maddalena, Lucia; Piccirillo, Marina; Manipur, Ichcha; Baruzzo, Giacomo; Cappellato, Marco; Avot, Batiste; Stan, Adrian; Battey, James; Lo Sasso, Giuseppe; Boue, Stephanie; Ivanov, Nikolai V; Peitsch, Manuel C; Hoeng, Julia; Falquet, Laurent; Di Camillo, Barbara; Guarracino, Mario R; Ulyantsev, Vladimir; Sierro, Nicolas; Poussin, Carine
Simulating microbial communities' evolution via Agent base modelling: a Python tool
2023 Bellato, Massimo; Cappellato, Marco; Calzavara, Andrea; Lucchiari, Alessandro; Rebecca, Sara; DI CAMILLO, Barbara
Simulation of bacteria interaction networks: from topology to species abundances
2024 Baldan, Matteo; Baruzzo, Giacomo; Cappellato, Marco; Rossato, Ada; Di Camilo, Barbara
Simulation of ground truth interaction networks from microbial community model
2022 Rossato, Ada; Cappellato, Marco; Baruzzo, Giacomo; DI CAMILLO, Barbara
Simulation of ground truth interaction networks from microbial community model
2022 Rossato, Ada; Cappellato, Marco; Nikoloska, Nora; Baruzzo, Giacomo; DI CAMILLO, Barbara
Temporal changes in microbiome composition after FMT in subject with C.Difficile infection: a network perspective
2022 Cappellato, M.; Bellato, M; Baruzzo, G; Facchin, S; Barzon, L; Besutti, V; Brun, P; Del Favero, S; Schenato, L; Savarino, Ev; Castagliuolo, I; Di Camillo, B
Uncover a microbiota signature of upper respiratory tract in patients with SARS-CoV-2+
2022 Longhin, Francesca; Cappellato, Marco; DEL VECCHIO, Claudia; Brancaccio, Giuseppina; Bellato, Massimo; Cattelan, Annamaria; Brun, Paola; Salaris, Caludio; Castagliuolo, Ignazio; DI CAMILLO, Barbara