TOPPO, STEFANO
TOPPO, STEFANO
Dipartimento di Medicina Molecolare - DMM
A Circadian Hygiene Education Initiative Covering the Pre-pandemic and Pandemic Period Resulted in Earlier Get-Up Times in Italian University Students: An Ecological Study
2022 Montagnese, Sara; Zarantonello, Lisa; Formentin, Chiara; Giusti, Gianluca; Mangini, Chiara; Isherwood, Cheryl M.; Ferrari, Paolo; Paoli, Antonio; Mapelli, Daniela; Rizzuto, Rosario; Toppo, Stefano; Skene, Debra J.; Vettor, Roberto; Costa, Rodolfo
A Comparison of Thiol Peroxidase Mechanisms
2011 L., Flohe'; Toppo, Stefano; Cozza, Giorgio; Ursini, Fulvio
A Comprehensive, high-resolution genomic transcript map of human skeletal muscle.
1998 Bortoluzzi, Stefania; Rampoldi, L.; Simionati, B.; Zimbello, R.; Barbon, A.; D'Alessi, F.; Tiso, Natascia; Pallavicini, A.; Toppo, Stefano; Cannata, N.; Valle, Giorgio; Lanfranchi, Gerolamo; Danieli, GIAN ANTONIO
A high quality draft consensus sequence of the genome of a heterozygous grapevinevariety.
2007 Velasco, R; Zharkikh, A; Troggio, M; Cartwright, Da; Cestaro, A; Pruss, D; Pindo, M; Fitzgerald, Lm; Vezzulli, S; Reid, J; Malacarne, G; Iliev, D; Coppola, G; Wardell, B; Micheletti, D; Macalma, T; Facci, M; Mitchell, Jt; Perazzolli, M; Eldredge, G; Gatto, P; Oyzerski, R; Moretto, M; Gutin, N; Stefanini, M; Chen, Y; Segala, C; Davenport, C; Demattãˆ, L; Mraz, A; Battilana, J; Stormo, K; Costa, F; Tao, Q; SI AMMOUR, A; Harkins, T; Lackey, A; Perbost, C; Taillon, B; Stella, A; Solovyev, V; Fawcett, Ja; Sterck, L; Vandepoele, K; Grando, Sm; Toppo, Stefano; Moser, C; Lanchbury, J; Bogden, R; Skolnick, M; Sgaramella, V; Bhatnagar, Sk; Fontana, P; Gutin, A; VAN DE PEER, Y; Salamini, F; Viola, R.
A large-scale evaluation of computational protein function prediction
2013 Predrag, Radivojac; Clark, Wyatt T.; Tal Ronnen Oron, ; Schnoes, Alexandra M.; Tobias, Wittkop; Artem, Sokolov; Kiley, Graim; Christopher, Funk; Karin, Verspoor; Asa Ben Hur, ; Gaurav, Pandey; Yunes, Jeffrey M.; Talwalkar, Ameet S.; Susanna, Repo; Souza, Michael L.; Piovesan, Damiano; Rita, Casadio; Zheng, Wang; Jianlin, Cheng; Hai, Fang; Julian, Gough; Patrik, Koskinen; Petri, Törönen; Jussi Nokso Koivisto, ; Liisa, Holm; Domenico, Cozzetto; Buchan, Daniel W. A.; Kevin, Bryson; Jones, David T.; Bhakti, Limaye; Harshal, Inamdar; Avik, Datta; Manjari, Sunitha K.; Rajendra, Joshi; Meghana, Chitale; Daisuke, Kihara; Lisewski, Andreas M.; Serkan, Erdin; Eric, Venner; Olivier, Lichtarge; Robert, Rentzsch; Haixuan, Yang; Romero, Alfonso E.; Prajwal, Bhat; Alberto, Paccanaro; Tobias, Hamp; Rebecca, Kaßner; Stefan, Seemayer; Esmeralda, Vicedo; Christian, Schaefer; Dominik, Achten; Florian, Auer; Ariane, Boehm; Tatjana, Braun; Maximilian, Hecht; Mark, Heron; Peter, Hönigschmid; Hopf, Thomas A.; Stefanie, Kaufmann; Michael, Kiening; Denis, Krompass; Cedric, Landerer; Yannick, Mahlich; Manfred, Roos; Jari, Björne; Tapio, Salakoski; Andrew, Wong; Hagit, Shatkay; Fanny, Gatzmann; Ingolf, Sommer; Wass, Mark N.; Sternberg, Michael J. E.; Nives, Škunca; Fran, Supek; Matko, Bošnjak; Panče, Panov; Sašo, Džeroski; Tomislav, Šmuc; Kourmpetis, Yiannis A. I.; van Dijk, Aalt D. J.; ter Braak, Cajo J. F.; Yuanpeng, Zhou; Qingtian, Gong; Xinran, Dong; Weidong, Tian; Falda, Marco; Paolo, Fontana; Lavezzo, Enrico; DI CAMILLO, Barbara; Toppo, Stefano; Liang, Lan; Nemanja, Djuric; Yuhong, Guo; Slobodan, Vucetic; Amos, Bairoch; Michal, Linial; Babbitt, Patricia C.; Brenner, Steven E.; Christine, Orengo; Burkhard, Rost; Mooney, Sean D.; Iddo, Friedberg
A Method to Reveal and Handle Heterogeneities and Inconsistencies in Gene Ontology Annotation.
2011 Facchinetti, Andrea; Sanavia, Tiziana; DI CAMILLO, Barbara; Lavezzo, Enrico; Fontana, P; Toppo, Stefano
A preliminary transcript map of a human skeletal muscle
1997 Pallavicini, A; Favino, V; Pacchioni, B; Trevisan, S; Pandolfo, D; Tiso, Natascia; Toppo, Stefano; Zimbello, R; Danieli, GIAN ANTONIO; Valle, G. AND LANFRANCHI G.
A semi-multiplex PCR technique for the screening of abundant transcripts during systematic sequencing of cDNA libraries.
1996 Pacchioni, B.; Trevisan, S.; Gomirato, S.; Toppo, Stefano; Valle, Giorgio; Lanfranchi, Gerolamo
A strategy to reduce technical variability and bias in RNA sequencing data.
2013 Finotello, Francesca; Lavezzo, Enrico; Barzon, Luisa; Mazzon, PAOLO EMILIO; P., Fontana; Toppo, Stefano; DI CAMILLO, Barbara
A two-step strategy for constructing specifically self-subtracted cDNA libraries
2002 Laveder, Paolo; DE PITTA', Cristiano; Toppo, Stefano; Valle, Giorgio; Lanfranchi, Gerolamo
A white paper on Phospholipid Hydroperoxide Glutathione Peroxidase (GPx4) forty years later
2022 Ursini, F.; Bosello Travain, V.; Cozza, G.; Miotto, G.; Roveri, A.; Toppo, S.; Maiorino, M.
Accurate Human Papillomavirus Genotyping by 454 Pyrosequencing
2013 Militello, Valentina; Lavezzo, Enrico; Costanzi, Giulia; Franchin, Elisa; DI CAMILLO, Barbara; Toppo, Stefano; Palu', Giorgio; Barzon, Luisa
Aerobic pyruvate metabolism sensitizes cells to ferroptosis primed by GSH depletion
2021 Vuckovic, A. -M.; Venerando, R.; Tibaldi, E.; Bosello Travain, V.; Roveri, A.; Bordin, L.; Miotto, G.; Cozza, G.; Toppo, S.; Maiorino, M.; Ursini, F.
Align: a C++ class library and web server for rapid sequence alignment prototyping
2006 Tosatto, Silvio; Albiero, A; Mantovan, A; Ferrari, Carlo; Bindewald, E; Toppo, Stefano
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
2016 Jiang, Yuxiang; Oron, Tal Ronnen; Clark, Wyatt T.; Bankapur, Asma R.; D'Andrea, Daniel; Lepore, Rosalba; Funk, Christopher S.; Kahanda, Indika; Verspoor, Karin M.; Ben Hur, Asa; Koo, Da Chen Emily; Penfold Brown, Duncan; Shasha, Dennis; Youngs, Noah; Bonneau, Richard; Lin, Alexandra; Sahraeian, Sayed M. E.; Martelli, Pier Luigi; Profiti, Giuseppe; Casadio, Rita; Cao, Renzhi; Zhong, Zhaolong; Cheng, Jianlin; Altenhoff, Adrian; Skunca, Nives; Dessimoz, Christophe; Dogan, Tunca; Hakala, Kai; Kaewphan, Suwisa; Mehryary, Farrokh; Salakoski, Tapio; Ginter, Filip; Fang, Hai; Smithers, Ben; Oates, Matt; Gough, Julian; Törönen, Petri; Koskinen, Patrik; Holm, Liisa; Chen, Ching Tai; Hsu, Wen Lian; Bryson, Kevin; Cozzetto, Domenico; Minneci, Federico; Jones, David T.; Chapman, Samuel; Bkc, Dukka; Khan, Ishita K.; Kihara, Daisuke; Ofer, Dan; Rappoport, Nadav; Stern, Amos; Cibrian Uhalte, Elena; Denny, Paul; Foulger, Rebecca E.; Hieta, Reija; Legge, Duncan; Lovering, Ruth C.; Magrane, Michele; Melidoni, Anna N.; Mutowo Meullenet, Prudence; Pichler, Klemens; Shypitsyna, Aleksandra; Li, Biao; Zakeri, Pooya; Elshal, Sarah; Tranchevent, Léon Charles; Das, Sayoni; Dawson, Natalie L.; Lee, David; Lees, Jonathan G.; Sillitoe, Ian; Bhat, Prajwal; Nepusz, Tamás; Romero, Alfonso E.; Sasidharan, Rajkumar; Yang, Haixuan; Paccanaro, Alberto; Gillis, Jesse; Sedeño Cortés, Adriana E.; Pavlidis, Paul; Feng, Shou; Cejuela, Juan M.; Goldberg, Tatyana; Hamp, Tobias; Richter, Lothar; Salamov, Asaf; Gabaldon, Toni; Marcet Houben, Marina; Supek, Fran; Gong, Qingtian; Ning, Wei; Zhou, Yuanpeng; Tian, Weidong; Falda, Marco; Fontana, Paolo; Lavezzo, Enrico; Toppo, Stefano; Ferrari, Carlo; Giollo, Manuel; Piovesan, Damiano; Tosatto, Silvio; del Pozo, Angela; Fernández, José M.; Maietta, Paolo; Valencia, Alfonso; Tress, Michael L.; Benso, Alfredo; Di Carlo, Stefano; Politano, Gianfranco; Savino, Alessandro; Rehman, Hafeez Ur; Re, Matteo; Mesiti, Marco; Valentini, Giorgio; Bargsten, Joachim W.; van Dijk, Aalt D. J.; Gemovic, Branislava; Glisic, Sanja; Perovic, Vladmir; Veljkovic, Veljko; Veljkovic, Nevena; Almeida e. Silva, Danillo C.; Vencio, Ricardo Z. N.; Sharan, Malvika; Vogel, Jörg; Kansakar, Lakesh; Zhang, Shanshan; Vucetic, Slobodan; Wang, Zheng; Sternberg, Michael J. E.; Wass, Mark N.; Huntley, Rachael P.; Martin, Maria J.; O'Donovan, Claire; Robinson, Peter N.; Moreau, Yves; Tramontano, Anna; Babbitt, Patricia C.; Brenner, Steven E.; Linial, Michal; Orengo, Christine A.; Rost, Burkhard; Greene, Casey S.; Mooney, Sean D.; Friedberg, Iddo; Radivojac, Predrag
An Overview of Protein Function Prediction Methods: A Deep Learning Perspective
2023 Ispano, E.; Bianca, F.; Lavezzo, E.; Toppo, S.
Antimicrobial Treatment and Containment Measures for an Extremely Drug-Resistant Klebsiella pneumoniae ST101 Isolate Carrying pKPN101-IT, a Novel Fully Sequenced blaKPC-2 Plasmid
2012 Frasson, Ilaria; Lavezzo, Enrico; Franchin, Elisa; Toppo, Stefano; Barzon, Luisa; A., Cavallaro; Richter, Sara; Palu', Giorgio
Applications of next-generation sequencing technologies to diagnostic virology.
2011 Barzon, Luisa; Lavezzo, Enrico; Militello, Valentina; Toppo, Stefano; Palu', Giorgio
Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.
2012 Falda, Marco; Toppo, Stefano; Pescarolo, Alessandro; Lavezzo, Enrico; DI CAMILLO, Barbara; Facchinetti, Andrea; Cilia, E; Velasco, R; Fontana, P.
Author Correction: SARS-CoV-2 antibody dynamics and transmission from community-wide serological testing in the Italian municipality of Vo’ (Nature Communications, (2021), 12, 1, (4383), 10.1038/s41467-021-24622-7)
2021 Dorigatti, I.; Lavezzo, E.; Manuto, L.; Ciavarella, C.; Pacenti, M.; Boldrin, C.; Cattai, M.; Saluzzo, F.; Franchin, E.; Del Vecchio, C.; Caldart, F.; Castelli, G.; Nicoletti, M.; Nieddu, E.; Salvadoretti, E.; Labella, B.; Fava, L.; Guglielmo, S.; Fascina, M.; Grazioli, M.; Alvisi, G.; Vanuzzo, M. C.; Zupo, T.; Calandrin, R.; Lisi, V.; Rossi, L.; Castagliuolo, I.; Merigliano, S.; Unwin, H. J. T.; Plebani, M.; Padoan, A.; Brazzale, A. R.; Toppo, S.; Ferguson, N. M.; Donnelly, C. A.; Crisanti, A.