COPPE, ALESSANDRO
COPPE, ALESSANDRO
Dipartimento di Salute della Donna e del Bambino - SDB
A bioinformatic and computational approach to regulation of genome function: integrated analysis of genome organization, promoter sequences and gene expression.
2008 Coppe, Alessandro
A computational framework for the integrated study of the role of promoters similarity and gene clustering in specific regions of the human genome in establishing co-expression of genes: an application to myeloid cells differentiation.
2008 Coppe, Alessandro; Ferrari, Francesco; Bisognin, Andrea; Bicciato, S; Ferrari, S; Danieli, GIAN ANTONIO; Bortoluzzi, Stefania
A data-driven network model of primary myelofibrosis: transcriptional and post-transcriptional alterations in CD34+ cells
2016 Calura, Enrica; Pizzini, Silvia; Bisognin, Andrea; Coppe, Alessandro; Sales, Gabriele; Gaffo, Enrico; Fanelli, T; Mannarelli, C; Zini, R; Norfo, R; Pennucci, V; Manfredini, R; Romualdi, Chiara; Guglielmelli, P; Vannucchi, A. M; Bortoluzzi, Stefania
A guilt-by-association mutation network in LGL leukemia
2017 Andersson, Emma I.; Coppe, Alessandro; Bortoluzzi, Stefania
A high definition picture of key genes and pathways mutated in pediatric follicular lymphoma
2019 Lovisa, Federica; Binatti, Andrea; Coppe, Alessandro; Primerano, Simona; Carraro, Elisa; Pillon, Marta; Pizzi, Marco; Guzzardo, Vincenza; Buffardi, Salvatore; Porta, Fulvio; Farruggia, Piero; De Santis, Raffaela; Bulian, Pietro; Basso, Giuseppe; Lazzari, Elena; D'Amore, Emanuele S G; Bortoluzzi, Stefania; Mussolin, Lara
A high definition picture of somatic mutations in chronic lymphoproliferative disorder of natural killer cells
2020 Gasparini, V. R.; Binatti, A.; Coppe, A.; Teramo, A.; Vicenzetto, C.; Calabretto, G.; Barila, G.; Barizza, A.; Giussani, E.; Facco, M.; Mustjoki, S.; Semenzato, G.; Zambello, R.; Bortoluzzi, S.
A multi-step bioinformatic approach detects putative regulatory elements in gene promoter
2005 Bortoluzzi, Stefania; Coppe, Alessandro; Bisognin, Andrea; Pizzi, Cinzia; Danieli, GIAN ANTONIO
A multistep bioinformatic approach detects putative regulatory elements in gene promoters
2005 Bortoluzzi, S.; Coppe, A.; Bisognin, A.; Pizzi, C.; Danieli, G. A.
A novel germline variant in PIK3R1 results in SHORT syndrome associated with TAL/LMO T-cell Acute Lymphoblastic Leukemia
2020 Marzollo, Antonio; Maestrini, Giacomo; La Starza, Roberta; Elia, Loredana; Malfona, Francesco; Pierini, Tiziana; TRETTI PARENZAN, Caterina; Coppe, Alessandro; Bortoluzzi, Stefania; Biffi, Alessandra; Mecucci, Cristina; Bresolin, Silvia; Maria Testi, Anna
A-MADMAN: annotation-based microarray data meta-analysis tool.
2009 Bisognin, Andrea; Coppe, Alessandro; Ferrari, F; Risso, Davide; Romualdi, Chiara; Bicciato, S; Bortoluzzi, Stefania
Abnormal expression patterns of WT1-as, MEG3 and ANRIL long non-coding RNAs in CD34+ cells from patients with primary myelofibrosis and their clinical correlations.
2014 Pennucci, V; Zini, R; Norfo, R; Guglielmelli, P; Bianchi, E; Salati, S; Sacchi, G; Prudente, Z; Tenedini, E; Ruberti, S; Paoli, C; Fanelli, T; Mannarelli, C; Tagliafico, E; Ferrari, S; Vannucchi, Am; Manfredini, R; on behalf of Associazione Italiana per la Ricerca sul Cancro Gruppo Italiano Malattie Mieloproliferative Investigators Collaborators Vannucchi, Am; Balliu, M; Bartalucci, N; Bogani, C; Bosi, A; Fanelli, T; Fjerza, R; Guglielmelli, P; Mannarelli, C; Martinelli, S; Pancrazzi, A; Paoli, C; Pieri, L; Bisognin, Andrea; Bortoluzzi, Stefania; Coppe, Alessandro; Saccoman, Claudia; Masciulli, A; Giovani, B; Azzan, C; Badalucco, S; Balduini, A; Bonetti, E; Campanelli, R; Catarsi, P; Isgrò, Ma; Lupo, Ml; Magrini, U; Massa, M; Poletto, V; Rosti, V; Villani, L; Cazzola, M; Ambaglio, I; Bernasconi, P; Casetti, Ic; Catricalà, S; Elena, C; Fugazza, E; Gallì, A; Malcovati, L; Milanesi, C; Pascutto, C; Pietra, D; Ripamonti, F; Rossi, M; Rumi, E; Dejana, E; Breviario, F; Corada, M; Erba, Bg; Rambaldi, A; Barbui, T; Ferrari, Ml; Finazzi, G; Finazzi, Mc; Gritti, G; Belotti, C; Boroni, C; Salmoiraghi, S; Amaru, A; Golay, J; Cilloni, D; Campia, V; Carturan, S; Guerrasio, A; Manfredini, R; Bianchi, E; Montanari, M; Salati, S; Tagliafico, E; Tenedini, E; Zini, R.
Detecting Seeded Motifs in DNA Sequences
2005 Pizzi, Cinzia; Bortoluzzi, Stefania; Bisognin, Andrea; Coppe, Alessandro; Danieli, GIAN ANTONIO
Genome Evolution in the Cold: Antarctic Icefish Muscle Transcriptome Reveals Selective Duplications Increasing Mitochondrial Function
2013 Coppe, Alessandro; Agostini, Cecilia; Marino, ILARIA ANNA MARIA; Zane, Lorenzo; Bargelloni, Luca; Bortoluzzi, Stefania; Patarnello, Tomaso
Genomic expression during human myelopoiesis.
2007 Ferrari, Francesco; Bortoluzzi, Stefania; Coppe, Alessandro; Basso, D; Bicciato, S; Zini, R; Gemelli, C; Danieli, GIAN ANTONIO; Ferrari, S.
Genomic landscape characterization of large granular lymphocyte leukemia with a systems genetics approach
2017 Coppe, A; Andersson, E I; Binatti, A; Gasparini, V R; Bortoluzzi, S; Clemente, M; Herling, M; Maciejewski, J; Mustjoki, S; Bortoluzzi, S
High frequency of endothelial colony forming cells marks a non-active myeloproliferative neoplasm with high risk of splanchnic vein thrombosis.
2010 Rosti, V; Bonetti, E; Bergamaschi, G; Campanelli, R; Guglielmelli, P; Maestri, M; Magrini, U; Massa, M; Tinelli, C; Viarengo, G; Villani, L; Primignani, M; Vannucchi, Am; Frassoni, F; Barosi, G; Agimm, Investigators; INCLUDING VANNUCCHI, Am; Antonioli, E; Bartalucci, N; Biamonte, F; Bogani, C; Bosi, A; Fjerza, R; Guglielmelli, P; Malevolti, E; Pancrazzi, A; Pieri, L; Spolverini, A; Susini, Mc; Tozzi, L; Bortoluzzi, Stefania; Bisognin, A; Coppe, A; Marchioli, R; Barosi, G; Azzan, C; Badalucco, S; Balduini, A; Bergamaschi, G; Bonetti, E; Campanelli, R; Carolei, A; Currao, M; Isgrã’, Ma; Lupo, Ml; Magrini, U; Massa, M; Magni, V; Rosti, V; Villani, L; Cazzola, M; Bernasconi, P; Boggi, S; Elena, C; Gallãœ, A; Malcovati, L; Pascutto, C; Passamonti, F; Pietra, D; Rumi, E; Dejana, E; Corada, M; Giannotta, M; Rambaldi, A; Ferrari, Ml; Finazzi, G; Finazzi, Mc; Magri, M; Quaresmini, G; Montalvo, Ml; Ricci, C; Salmoiraghi, S; Spinelli, O; Amaru, A; Golay, J; Cilloni, D; Arruga, F; Bracco, E; Carturan, S; Gaidano, V; Guerrasio, A; Pradotto, M; Manfredini, R; Bianchi, E; Montanari, M; Salati, S; Tagliafico, E; Tenedini, E; Zini, R.
High incidence of activating STAT5B mutations in CD4-positive T-cell large granular lymphocyte leukemia
2016 Andersson, Emma; Tanahashi, Takahiro; Sekiguchi, Nodoka; Gasparini, VANESSA REBECCA; Bortoluzzi, Sabrina; Kawakami, Toru; Matsuda, Kazuyuki; Mitsui, Takeki; Eldfors, Samuli; Bortoluzzi, Stefania; Coppe, Alessandro; Binatti, Andrea; Lagström, Sonja; Ellonen, Pekka; Fukushima, Noriyasu; Nishina, Sayaka; Senoo, Noriko; Sakai, Hitoshi; Nakazawa, Hideyuki; Kwong, Yok Lam; Loughran, Thomas P; Maciejewski, Jaroslaw P; Mustjoki, Satu; Ishida, Fumihiro
Impact of host genes and strand selection on miRNA and miRNA* expression.
2011 Biasiolo, Marta; Sales, Gabriele; Lionetti, M; Agnelli, L; Todoerti, K; Bisognin, Andrea; Coppe, Alessandro; Romualdi, Chiara; Neri, A; Bortoluzzi, Stefania
Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection.
2010 Sales, Gabriele; Coppe, Alessandro; Bicciato, S; Bortoluzzi, Stefania; Romualdi, Chiara
iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data
2020 Binatti, Andrea; Bresolin, Silvia; Bortoluzzi, Stefania; Coppe, Alessandro