FALDA, MARCO
FALDA, MARCO
A large-scale evaluation of computational protein function prediction
2013 Predrag, Radivojac; Clark, Wyatt T.; Tal Ronnen Oron, ; Schnoes, Alexandra M.; Tobias, Wittkop; Artem, Sokolov; Kiley, Graim; Christopher, Funk; Karin, Verspoor; Asa Ben Hur, ; Gaurav, Pandey; Yunes, Jeffrey M.; Talwalkar, Ameet S.; Susanna, Repo; Souza, Michael L.; Piovesan, Damiano; Rita, Casadio; Zheng, Wang; Jianlin, Cheng; Hai, Fang; Julian, Gough; Patrik, Koskinen; Petri, Törönen; Jussi Nokso Koivisto, ; Liisa, Holm; Domenico, Cozzetto; Buchan, Daniel W. A.; Kevin, Bryson; Jones, David T.; Bhakti, Limaye; Harshal, Inamdar; Avik, Datta; Manjari, Sunitha K.; Rajendra, Joshi; Meghana, Chitale; Daisuke, Kihara; Lisewski, Andreas M.; Serkan, Erdin; Eric, Venner; Olivier, Lichtarge; Robert, Rentzsch; Haixuan, Yang; Romero, Alfonso E.; Prajwal, Bhat; Alberto, Paccanaro; Tobias, Hamp; Rebecca, Kaßner; Stefan, Seemayer; Esmeralda, Vicedo; Christian, Schaefer; Dominik, Achten; Florian, Auer; Ariane, Boehm; Tatjana, Braun; Maximilian, Hecht; Mark, Heron; Peter, Hönigschmid; Hopf, Thomas A.; Stefanie, Kaufmann; Michael, Kiening; Denis, Krompass; Cedric, Landerer; Yannick, Mahlich; Manfred, Roos; Jari, Björne; Tapio, Salakoski; Andrew, Wong; Hagit, Shatkay; Fanny, Gatzmann; Ingolf, Sommer; Wass, Mark N.; Sternberg, Michael J. E.; Nives, Škunca; Fran, Supek; Matko, Bošnjak; Panče, Panov; Sašo, Džeroski; Tomislav, Šmuc; Kourmpetis, Yiannis A. I.; van Dijk, Aalt D. J.; ter Braak, Cajo J. F.; Yuanpeng, Zhou; Qingtian, Gong; Xinran, Dong; Weidong, Tian; Falda, Marco; Paolo, Fontana; Lavezzo, Enrico; DI CAMILLO, Barbara; Toppo, Stefano; Liang, Lan; Nemanja, Djuric; Yuhong, Guo; Slobodan, Vucetic; Amos, Bairoch; Michal, Linial; Babbitt, Patricia C.; Brenner, Steven E.; Christine, Orengo; Burkhard, Rost; Mooney, Sean D.; Iddo, Friedberg
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
2016 Jiang, Yuxiang; Oron, Tal Ronnen; Clark, Wyatt T.; Bankapur, Asma R.; D'Andrea, Daniel; Lepore, Rosalba; Funk, Christopher S.; Kahanda, Indika; Verspoor, Karin M.; Ben Hur, Asa; Koo, Da Chen Emily; Penfold Brown, Duncan; Shasha, Dennis; Youngs, Noah; Bonneau, Richard; Lin, Alexandra; Sahraeian, Sayed M. E.; Martelli, Pier Luigi; Profiti, Giuseppe; Casadio, Rita; Cao, Renzhi; Zhong, Zhaolong; Cheng, Jianlin; Altenhoff, Adrian; Skunca, Nives; Dessimoz, Christophe; Dogan, Tunca; Hakala, Kai; Kaewphan, Suwisa; Mehryary, Farrokh; Salakoski, Tapio; Ginter, Filip; Fang, Hai; Smithers, Ben; Oates, Matt; Gough, Julian; Törönen, Petri; Koskinen, Patrik; Holm, Liisa; Chen, Ching Tai; Hsu, Wen Lian; Bryson, Kevin; Cozzetto, Domenico; Minneci, Federico; Jones, David T.; Chapman, Samuel; Bkc, Dukka; Khan, Ishita K.; Kihara, Daisuke; Ofer, Dan; Rappoport, Nadav; Stern, Amos; Cibrian Uhalte, Elena; Denny, Paul; Foulger, Rebecca E.; Hieta, Reija; Legge, Duncan; Lovering, Ruth C.; Magrane, Michele; Melidoni, Anna N.; Mutowo Meullenet, Prudence; Pichler, Klemens; Shypitsyna, Aleksandra; Li, Biao; Zakeri, Pooya; Elshal, Sarah; Tranchevent, Léon Charles; Das, Sayoni; Dawson, Natalie L.; Lee, David; Lees, Jonathan G.; Sillitoe, Ian; Bhat, Prajwal; Nepusz, Tamás; Romero, Alfonso E.; Sasidharan, Rajkumar; Yang, Haixuan; Paccanaro, Alberto; Gillis, Jesse; Sedeño Cortés, Adriana E.; Pavlidis, Paul; Feng, Shou; Cejuela, Juan M.; Goldberg, Tatyana; Hamp, Tobias; Richter, Lothar; Salamov, Asaf; Gabaldon, Toni; Marcet Houben, Marina; Supek, Fran; Gong, Qingtian; Ning, Wei; Zhou, Yuanpeng; Tian, Weidong; Falda, Marco; Fontana, Paolo; Lavezzo, Enrico; Toppo, Stefano; Ferrari, Carlo; Giollo, Manuel; Piovesan, Damiano; Tosatto, Silvio; del Pozo, Angela; Fernández, José M.; Maietta, Paolo; Valencia, Alfonso; Tress, Michael L.; Benso, Alfredo; Di Carlo, Stefano; Politano, Gianfranco; Savino, Alessandro; Rehman, Hafeez Ur; Re, Matteo; Mesiti, Marco; Valentini, Giorgio; Bargsten, Joachim W.; van Dijk, Aalt D. J.; Gemovic, Branislava; Glisic, Sanja; Perovic, Vladmir; Veljkovic, Veljko; Veljkovic, Nevena; Almeida e. Silva, Danillo C.; Vencio, Ricardo Z. N.; Sharan, Malvika; Vogel, Jörg; Kansakar, Lakesh; Zhang, Shanshan; Vucetic, Slobodan; Wang, Zheng; Sternberg, Michael J. E.; Wass, Mark N.; Huntley, Rachael P.; Martin, Maria J.; O'Donovan, Claire; Robinson, Peter N.; Moreau, Yves; Tramontano, Anna; Babbitt, Patricia C.; Brenner, Steven E.; Linial, Michal; Orengo, Christine A.; Rost, Burkhard; Greene, Casey S.; Mooney, Sean D.; Friedberg, Iddo; Radivojac, Predrag
Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.
2012 Falda, Marco; Toppo, Stefano; Pescarolo, Alessandro; Lavezzo, Enrico; DI CAMILLO, Barbara; Facchinetti, Andrea; Cilia, E; Velasco, R; Fontana, P.
Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data
2012 Finotello, Francesca; Lavezzo, Enrico; Fontana, P; Peruzzo, Denis; Albiero, A; Barzon, Luisa; Falda, Marco; DI CAMILLO, Barbara; Toppo, Stefano
Dynamic consistency of fuzzy conditional temporal problems
2010 Falda, Marco; Rossi, Francesca; Venable, KRISTEN BRENT
Eliciting the Functional Taxonomy from protein annotations and taxa
2016 Falda, Marco; Lavezzo, Enrico; Fontana, Paolo; Bianco, Luca; Berselli, Michele; Formentin, Elide; Toppo, Stefano
Enhancing protein function prediction with taxonomic constraints - The Argot2.5 web server
2016 Lavezzo, Enrico; Falda, Marco; Fontana, Paolo; Bianco, Luca; Toppo, Stefano
Fast Regulation of Hormone Metabolism Contributes to Salt Tolerance in Rice (Oryza sativa spp. Japonica, L.) by Inducing Specific Morpho-Physiological Responses
2018 Formentin, Elide; Barizza, Elisabetta; Stevanato, Piergiorgio; Falda, Marco; Massa, Federica; Tarkowskà, Danuše; Novák, Ondřej; Lo Schiavo, Fiorella
Fuzzy Conditional Temporal Problems: Strong and Weak Consistency.
2008 Falda, Marco; Rossi, Francesca; Venable, KRISTEN BRENT
Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak
2013 Lavezzo, Enrico; Toppo, Stefano; Franchin, Elisa; DI CAMILLO, Barbara; Finotello, Francesca; Falda, Marco; Manganelli, Riccardo; Palu', Giorgio; Barzon, Luisa
High confidence and sensitivity four-dimensional fractionation for human plasma proteome analysis.
2012 Millioni, Renato; Tolin, S; Fadini, GIAN PAOLO; Falda, Marco; van Breukelen, B; Tessari, Paolo; Arrigoni, Giorgio
Integrating quantitative and qualitative fuzzy temporal constraints
2004 Badaloni, Silvana; Falda, Marco; Giacomin, M.
keeSeek: searching distant non-existing words in genomes for PCR-based applications.
2014 Falda, Marco; Fontana, P; Barzon, Luisa; Toppo, Stefano; Lavezzo, Enrico
Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene
2018 Sambo, Francesco; Finotello, Francesca; Lavezzo, Enrico; Baruzzo, Giacomo; Masi, Giulia; Peta, Elektra; Falda, Marco; Toppo, Stefano; Barzon, Luisa; Di Camillo, Barbara
Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms
2017 Bianco, Luca; Riccadonna, Samantha; Lavezzo, Enrico; Falda, Marco; Formentin, Elide; Cavalieri, Duccio; Toppo, Stefano; Fontana, Paolo
Performance Analysis on Trained and Recreational Runners in the Venice Marathon Events from 2007 to 2019
2023 Albertin, G.; Zuccon, D.; Guidolin, D.; De Caro, R.; Falda, M.; Carraro, U.; Astolfi, L.
Quantitative label-free redox proteomics of reversible cysteine oxidation in red blood cell membranes
2014 Zaccarin, Mattia; Falda, Marco; Roveri, Antonella; BOSELLO TRAVAIN, Valentina; Bordin, Luciana; Maiorino, Matilde; Ursini, Fulvio; Toppo, Stefano
Redox status in a model of cancer stem cells
2017 Zaccarin, Mattia; BOSELLO TRAVAIN, Valentina; DI PAOLO, MARIA LUISA; Falda, Marco; Maiorino, Matilde; Miotto, Giovanni; Piccolo, Stefano; Roveri, Antonella; Ursini, Fulvio; Venerando, Rina; Toppo, Stefano
Semantic wikis as flexible database interfaces for biomedical applications.
2023 Falda, Marco; Atzori, Manfredo; Corbetta, Maurizio
SimBioNeT: A Simulator of Biological Network Topology
2012 DI CAMILLO, Barbara; Falda, Marco; Toffolo, GIANNA MARIA; Cobelli, Claudio