VANDIN, FABIO
VANDIN, FABIO
Dipartimento di Ingegneria dell'Informazione - DEI
Accurate Computation of Survival Statistics in Genome-Wide Studies
2015 Vandin, Fabio; Papoutsaki, Alexandra; Raphael, Benjamin J.; Upfal, Eli
Algorithms and genome sequencing: Identifying driver pathways in cancer
2012 Vandin, Fabio; Upfal, Eli; Raphael, Benjamin J.
Algorithms for detecting significantly mutated pathways in cancer
2011 Vandin, Fabio; Upfal, Eli; Raphael, Benjamin J.
ALLSTAR: inference of reliAble causaL ruLes between Somatic muTAtions and canceR phenotypes
2024 Simionato, Dario; Collesei, Antonio; Miglietta, Federica; Vandin, Fabio
An Efficient Rigorous Approach for Identifying Statistically Significant Frequent Itemsets
2012 Adam, Kirsch; Michael, Mitzenmacher; Pietracaprina, ANDREA ALBERTO; Pucci, Geppino; Eli, Upfal; Vandin, Fabio
Attention-Based Deep Learning Framework for Human Activity Recognition with User Adaptation
2021 Buffelli, D.; Vandin, F.
Ballast: A ball-based algorithm for structural motifs
2013 He, Lu; Vandin, Fabio; Pandurangan, Gopal; Bailey Kellogg, Chris
caSPiTa: mining statistically significant paths in time series data from an unknown network
2023 Tonon, A.; Vandin, F.
Clustering Uncertain Graphs
2017 Ceccarello, Matteo; Fantozzi, Carlo; Pietracaprina, ANDREA ALBERTO; Pucci, Geppino; Vandin, Fabio
CoExpresso: Assess the quantitative behavior of protein complexes in human cells
2019 Chalabi, Morteza H.; Tsiamis, Vasileios; Käll, Lukas; Vandin, Fabio; Schwämmle, Veit
CoMEt: A statistical approach to identify combinations of mutually exclusive alterations in cancer
2015 Leiserson, Mark DM; Wu, Hsin Ta; Vandin, Fabio; Raphael, Benjamin J.
Comparison of microbiome samples: methods and computational challenges
2021 Comin, Matteo; DI CAMILLO, Barbara; Pizzi, Cinzia; Vandin, Fabio
Comprehensivemolecular characterization of clear cell renal cell carcinoma
2013 Creighton, Chad J.; Morgan, Margaret; Gunaratne, Preethi H.; Wheeler, David A.; Gibbs, Richard A; Robertson, Gordon; Chu, Andy; Beroukhim, Rameen; Cibulskis, Kristian; Signoretti, Sabina; Vandin, Fabio; Wu, Hsin Ta; Raphael, Benjamin J.; Verhaak, Roel G. W.; Tamboli, Pheroze; Torres Garcia, Wandaliz; Akbani, Rehan; Weinstein, John N.; Reuter, Victor; Hsieh, James J.; Brannon, A. Rose; Hakimi, A. Ari; Jacobsen, Anders; Ciriello, Giovanni; Reva, Boris; Ricketts, Christopher J.; Linehan, W. Marston; Stuart, Joshua M.; Rathmell, W. Kimryn; Hui, Shen; Laird, Peter W.; Muzny, Donna; Davis, Caleb; Liu, Xi; Chang, Kyle; Kakkar, Nipun; Treviño, Lisa R.; Benton, Susan; Reid, Jeffrey G.; Morton, Donna; Doddapaneni, Harsha; Yi, Han; Lewis, Lora; Huyen, Dinh; Kovar, Christie; Zhu, Yiming; Santibanez, Jireh; Min, Wang; Hale, Walker; Kalra, Divya; Getz, Gad; Lawrence, Michael S.; Sougnez, Carrie; Carter, Scott L.; Sivachenko, Andrey; Lee, Lichtenstein; Stewart, Chip; Voet, Doug; Fisher, Sheila; Gabriel, Stacey B.; Lander, Eric; Schumacher, Steve E.; Tabak, Barbara; Saksena, Gordon; Onofrio, Robert C.; Cherniack, Andrew D.; Gentry, Jeff; Ardlie, Kristin; Meyerson, Matthew; Chun, Hye Jung E.; Mungall, Andrew J.; Sipahimalani, Payal; Stoll, Dominik; Ally, Adrian; Balasundaram, Miruna; Butterfield, Yaron S. N.; Carlsen, Rebecca; Carter, Candace; Chuah, Eric; Coope, Robin J. N.; Dhalla, Noreen; Gorski, Sharon; Guin, Ranabir; Hirst, Carrie; Hirst, Martin; Holt, Robert A.; Lebovitz, Chandra; Lee, Darlene; Li, Haiyan I.; Mayo, Michael; Moore, Richard A.; Pleasance, Erin; Plettner, Patrick; Schein, Jacqueline E.; Shafiei, Arash; Slobodan, Jared R.; Tam, Angela; Thiessen, Nina; Varhol, Richard J.; Wye, Natasja; Zhao, Yongjun; Birol, Inanc; Jones, Steven J. M.; Marra, Marco A.; Auman, J. Todd; Tan, Donghui; Jones, Corbin D.; Hoadley, Katherine A.; Mieczkowski, Piotr A.; Mose, Lisle E.; Jefferys, Stuart R.; Topal, Michael D.; Liquori, Christina; Turman, Yidi J.; Yan, Shi; Waring, Scot; Buda, Elizabeth; Walsh, Jesse; Wu, Junyuan; Bodenheimer, Tom; Hoyle, Alan P.; Simons, Janae V.; Soloway, Mathew G.; Balu, Saianand; Parker, Joel S.; Hayes, D. Neil; Perou, Charles M.; Kucherlapati, Raju; Park, Peter; Timothy, Triche J. r.; Weisenberger, Daniel J.; Lai, Phillip H.; Bootwalla, Moiz S.; Maglinte, Dennis T.; Mahurkar, Swapna; Berman, Benjamin P.; Van Den Berg, David J.; Cope, Leslie; Baylin, Stephen B.; Noble, Michael S.; Dicara, Daniel; Zhang, Hailei; Cho, Juok; Heiman, David I.; Gehlenborg, Nils; Mallard, William; Pei, Lin; Frazer, Scott; Stojanov, Petar; Liu, Yingchun; Zhou, Lihua; Kim, Jaegil; Chin, Lynda; Benz, Christopher; Yau, Christina; Reynolds, Sheila M.; Shmulevich, Ilya; Vegesna, Rahul; Kim, Hoon; Wei, Zhang; Cogdell, David; Jonasch, Eric; Ding, Zhiyong; Lu, Yiling; Zhang, Nianxiang; Unruh, Anna K.; Casasent, Tod D.; Wakefield, Chris; Tsavachidou, Dimitra; Mills, Gordon B.; Gao, Jianjiong; Cerami, Ethan; Gross, Benjamin; Aksoy, B. Arman; Sinha, Rileen; Weinhold, Nils; Sumer, S. Onur; Taylor, Barry S.; Shen, Ronglai; Ostrovnaya, Irina; Berger, Michael F.; Ladanyi, Marc; Sander, Chris; Fei, Suzanne S.; Stout, Andrew; Spellman, Paul T.; Rubin, Daniel L.; Liu, Tiffany T.; Sam, Ng; Paull, Evan O.; Carlin, Daniel; Goldstein, Theodore; Waltman, Peter; Ellrott, Kyle; Jing, Zhu; Haussler, David; Xiao, Weimin; Shelton, Candace; Gardner, Johanna; Penny, Robert; Sherman, Mark; Mallery, David; Morris, Scott; Paulauskis, Joseph; Burnett, Ken; Shelton, Troy; Kaelin, William G.; Choueiri, Toni; Atkins, Michael B.; Curley, Erin; Tickoo, Satish; Thorne, Leigh; Boice, Lori; Mei, Huang; Fisher, Jennifer C.; Vocke, Cathy D.; Peterson, James; Worrell, Robert; Merino, Maria J.; Schmidt, Laura S.; Czerniak, Bogdan A.; Aldape, Kenneth D.; Wood, Christopher G.; Boyd, Jeff; Weaver, Jo Ellen; Iacocca, Mary V.; Petrelli, Nicholas; Witkin, Gary; Brown, Jennifer; Czerwinski, Christine; Huelsenbeck Dill, Lori; Rabeno, Brenda; Myers, Jerome; Morrison, Carl; Bergsten, Julie; Eckman, John; Harr, Jodi; Smith, Christine; Tucker, Kelinda; Zach, Leigh Anne; Bshara, Wiam; Gaudioso, Carmelo; Dhir, Rajiv; Maranchie, Jodi; Nelson, Joel; Parwani, Anil; Potapova, Cureline Olga; Fedosenko, Konstantin; Cheville, John C.; Thompson, R. Houston; Mosquera, Juan M.; Rubin, Mark A.; Blute, Michael L.; Pihl, Todd; Jensen, Mark; Sfeir, Robert; Kahn, Ari; Chu, Anna; Kothiyal, Prachi; Snyder, Eric; Pontius, Joan; Ayala, Brenda; Backus, Mark; Walton, Jessica; Baboud, Julien; Berton, Dominique; Nicholls, Matthew; Srinivasan, Deepak; Raman, Rohini; Girshik, Stanley; Kigonya, Peter; Alonso, Shelley; Sanbhadti, Rashmi; Barletta, Sean; Pot, David; Sheth, Margi; Demchok, John A.; Davidsen, Tanja; Wang, Zhining; Yang, Liming; Tarnuzzer, Roy W.; Zhang, Jiashan; Eley, Greg; Ferguson, Martin L.; Mills Shaw, Kenna R.; Guyer, Mark S.; Ozenberger, Bradley A.; Sofia, Heidi J.
Computational methods for characterizing cancer mutational heterogeneity
2017 Vandin, Fabio
Computational pan-genomics: status, promises and challenges
2016 Marschall, T.; Marz, M.; Abeel, T.; Dijkstra, L.; Dutilh, B. E.; Ghaffaari, A.; Kersey, P.; Kloosterman, W. P.; Mäkinen, V.; Novak, A. M.; Paten, B.; Porubsky, D.; Rivals, E.; Alkan, C.; Baaijens, J. A.; De Bakker, p. I. W.; Boeva, V.; Bonnal, R. J. P.; Chiaromonte, F.; Chikhi, R.; Ciccarelli, F. D.; Cijvat, R.; Datema, E.; Van Duijn, C. M.; Eichler, E. E.; Ernst, C.; Eskin, E.; Garrison, E.; El-Kebir, M.; Klau, G. W.; Korbel, J. O.; Lameijer, E. -W.; Langmead, B.; Martin, M.; Medvedev, P.; Mu, J. C.; Neerincx, P.; Ouwens, K.; Peterlongo, P.; Pisanti, N.; Rahmann, S.; Raphael, B.; Reinert, K.; de Ridder, D.; de Ridder, J.; Schlesner, M.; Schulz-Trieglaff, O.; Sanders, A. D.; Sheikhizadeh, S.; Shneider, C.; Smit, S.; Valenzuela, D.; Wang, J.; Wessels, L.; Zhang, Y.; Guryev, V.; Vandin, F.; Ye, K.; Schönhuth, A.
De novo discovery of mutated driver pathways in cancer
2012 Vandin, Fabio; Upfal, Eli; Raphael, Benjamin J.
De novo pathway-based biomarker identification
2017 Alcaraz, Nicolas; List, Markus; Batra, Richa; Vandin, Fabio; Ditzel, Henrik J.; Baumbach, Jan
Differentially Methylated Genomic Regions in Birth-Weight Discordant Twin Pairs
2016 Chen, Mubo; Baumbach, Jan; Vandin, Fabio; Röttger, Richard; Barbosa, Eudes; Dong, Mingchui; Frost, Morten; Christiansen, Lene; Tan, Qihua
Differentially mutated subnetworks discovery
2019 Hajkarim, Morteza Chalabi; Upfal, Eli; Vandin, Fabio
Discovering significant evolutionary trajectories in cancer phylogenies
2022 Pellegrina, Leonardo; Vandin, Fabio