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Titolo Data di pubblicazione Autori Rivista Serie Titolo libro
Covid-19 Pandemic’s Enduring Impact on Urban Mobility: The Case of Free-Floating Bike Sharing in Padova, Italy 2024 Cavattoni, MargheritaComin, MatteoSilvestri, Francesco TRANSPORTATION RESEARCH RECORD - -
Enhanced Compression of k-Mer Sets with Counters via de Bruijn Graphs 2024 Rossignolo, EnricoComin, Matteo JOURNAL OF COMPUTATIONAL BIOLOGY - -
Efficient Hashing of Multiple Spaced Seeds with Application 2023 Pizzi, CinziaComin, Matteo + - - Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2023) - Volume 3: BIOINFORMATICS
ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs 2023 Cavattoni, MargheritaComin, Matteo JOURNAL OF COMPUTATIONAL BIOLOGY - -
USTAR: Improved Compression of k-mer Sets with Counters Using de Bruijn Graphs 2023 Rossignolo, EnricoComin, Matteo - LECTURE NOTES IN COMPUTER SCIENCE Bioinformatics Research and Applications. ISBRA 2023
SPRISS: Approximating Frequent K-mers by Sampling Reads, and Applications 2022 Santoro, DiegoPellegrina, LeonardoComin, MatteoVandin, Fabio BIOINFORMATICS - -
Efficient k-mer Indexing with Application to Mapping-free SNP Genotyping 2022 Andreace, FComin, M + - - Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies - BIOINFORMATICS
Boosting Metagenomic Classification with Reads Overlap Graphs 2021 Cavattoni M.Comin M. - LECTURE NOTES IN ARTIFICIAL INTELLIGENCE Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Special Issue of the 1st International Applied Bioinformatics Conference (iABC'21) 2021 Comin, Matteo + JOURNAL OF INTEGRATIVE BIOINFORMATICS - -
MetaProb 2: Metagenomic Reads Binning Based on Assembly Using Minimizers and K-Mers Statistics 2021 Andreace, FrancescoPizzi, CinziaComin, Matteo JOURNAL OF COMPUTATIONAL BIOLOGY - -
Fast alignment of reads to a variation graph with application to SNP detection 2021 Comin, Matteo + JOURNAL OF INTEGRATIVE BIOINFORMATICS - -
MetaProb 2: Improving Unsupervised Metagenomic Binning with Efficient Reads Assembly Using Minimizers 2021 Andreace, F.Pizzi, C.Comin, M. - LECTURE NOTES IN ARTIFICIAL INTELLIGENCE Lecture Notes in Computer Science
K2Mem: Discovering Discriminative K-mers from Sequencing Data for Metagenomic Reads Classification 2021 Storato D.Comin M. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS - -
Comparison of microbiome samples: methods and computational challenges 2021 Matteo CominBarbara Di CamilloCinzia PizziFabio Vandin BRIEFINGS IN BIOINFORMATICS - -
Iterative Spaced Seed Hashing: Closing the Gap between Spaced Seed Hashing and k-mer Hashing 2020 Pizzi C.Comin M. + JOURNAL OF COMPUTATIONAL BIOLOGY - -
Improving Metagenomic Classification Using Discriminative k-mers from Sequencing Data 2020 Storato D.Comin M. - LECTURE NOTES IN ARTIFICIAL INTELLIGENCE Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing 2019 Pizzi C.Comin M. + - LECTURE NOTES IN ARTIFICIAL INTELLIGENCE Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Better quality score compression through sequence-based quality smoothing 2019 Shibuya, YoshihiroComin, Matteo BMC BIOINFORMATICS - -
Indexing k-mers in linear space for quality value compression 2019 Shibuya Y.Comin M. JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY - -
MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage 2019 Qian, JiaComin, Matteo BMC BIOINFORMATICS - -
Benchmarking of alignment-free sequence comparison methods 2019 Comin, Matteo + GENOME BIOLOGY - -
Indexing k-mers in linear-space for quality value compression 2019 SHIBUYA, YOSHIHIROComin M. - - BIOINFORMATICS 2019 - 10th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 12th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2019
Fast and sensitive classification of short metagenomic reads with SKraken 2018 QIAN, JIAMarchiori, DavideComin, Matteo - - 10th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC
FSH: Fast spaced seed hashing exploiting adjacent hashes 2018 Girotto, SamueleComin, MatteoPizzi, Cinzia ALGORITHMS FOR MOLECULAR BIOLOGY - -
Data-driven smart bike-sharing system by implementing machine learning algorithms 2018 Qian, JiaComin, Matteo + - - Proceedings - 2018 6th International Conference on Enterprise Systems, ES 2018
Efficient computation of spaced seed hashing with block indexing 2018 Girotto S.Comin M.Pizzi C. BMC BIOINFORMATICS - -
SKraken: Fast and Sensitive Classification of Short Metagenomic Reads based on Filtering Uninformative k-mers 2017 COMIN, MATTEOMARCHIORI, DAVIDE - - Proceedings of the 10th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOINFORMATICS,
Higher recall in metagenomic sequence classification exploiting overlapping reads 2017 Girotto, SamueleComin, MatteoPizzi, Cinzia BMC GENOMICS - -
Binning metagenomic reads with probabilistic sequence signatures based on spaced seeds 2017 Girotto, SamueleComin, MatteoPizzi, Cinzia - - 2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2017
Assembly-free techniques for NGS data 2017 Comin, MatteoSCHIMD, MICHELE - - Algorithms for Next-Generation Sequencing Data: Techniques, Approaches, and Applications
Metagenomic reads binning with spaced seeds 2017 GIROTTO, SAMUELECOMIN, MATTEOPIZZI, CINZIA THEORETICAL COMPUTER SCIENCE - -
Fast spaced seed hashing 2017 GIROTTO, SAMUELECOMIN, MATTEOPIZZI, CINZIA LEIBNIZ INTERNATIONAL PROCEEDINGS IN INFORMATICS - Leibniz International Proceedings in Informatics, LIPIcs
On the comparison of regulatory sequences with multiple resolution Entropic Profiles 2016 COMIN, MATTEOANTONELLO, MORRIS BMC BIOINFORMATICS - -
Higher recall in metagenomic sequence classification exploiting Overlapping Reads 2016 GIROTTO, SAMUELECOMIN, MATTEOPIZZI, CINZIA - - 2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2016
MetaProb: Accurate metagenomic reads binning based on probabilistic sequence signatures 2016 GIROTTO, SAMUELEPIZZI, CINZIACOMIN, MATTEO BIOINFORMATICS - -
Fast comparison of genomic and meta-genomic reads with alignment-free measures based on quality values 2016 COMIN, MATTEOSCHIMD, MICHELE BMC MEDICAL GENOMICS - -
Alignment-Free Measures for Whole-Genome Comparison 2015 COMIN, MATTEOVERZOTTO, DAVIDE - - Pattern Recognition in Computational Molecular Biology: Techniques and Approaches
Fast Alignment-free Comparison for Regulatory Sequences using Multiple Resolution Entropic Profiles 2015 ANTONELLO, MORRISCOMIN, MATTEO - - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms,
Clustering of reads with alignment-free measures and quality values 2015 COMIN, MATTEOLEONI, ANDREASCHIMD, MICHELE ALGORITHMS FOR MOLECULAR BIOLOGY - -
Comparing, ranking, and filtering motifs with character classes: Application to biological sequences analysis 2014 Comin M.Verzotto D. - - Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data
Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns 2014 COMIN, MATTEOSCHIMD, MICHELE BMC BIOINFORMATICS - -
Parallel Continuous Flow: A Parallel Suffix Tree Construction Tool for Whole Genomes 2014 COMIN, MATTEO + JOURNAL OF COMPUTATIONAL BIOLOGY - -
QCluster: Extending Alignment-Free Measures with Quality Values for Reads ClusteringAlgorithms in Bioinformatics 2014 COMIN, MATTEOLEONI, ANDREASCHIMD, MICHELE - - Lecture Notes in Computer ScienceAlgorithms in Bioinformatics
Beyond fixed-resolution alignment-free measures for mammalian enhancers sequence comparison 2014 COMIN, MATTEO + IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS - -
Fast Entropic Profiler: An Information Theoretic Approach for the Discovery of Patterns in Genomes 2014 COMIN, MATTEOANTONELLO, MORRIS IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS - -
Pattern Recognition in Bioinformatics 2014 COMIN, MATTEO + - - -
Protein Structure Comparison, High Performance Computing 2013 COMIN, MATTEO + - - Encyclopedia of System Biology
Comparing ranking and filtering motifs with character classes: application to biological sequence analysis 2013 COMIN, MATTEO + - WILEY SERIES ON BIOINFORMATICS Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data
Efficient parallel construction of suffix trees for genomes larger than main memoryProceedings of the 20th European MPI Users' Group Meeting on - EuroMPI '13 2013 COMIN, MATTEO + - - Proceedings of the 20th European MPI Users' Group Meeting on - EuroMPI '13
Reducing the Space of Degenerate Patterns in Protein Remote Homology Detection2013 24th International Workshop on Database and Expert Systems Applications 2013 COMIN, MATTEO + - - 2013 24th International Workshop on Database and Expert Systems Applications
Mostrati risultati da 1 a 50 di 81
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