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Titolo Data di pubblicazione Autori Rivista Serie Titolo libro
Covid-19 Pandemic’s Enduring Impact on Urban Mobility: The Case of Free-Floating Bike Sharing in Padova, Italy 2024 Cavattoni, MargheritaComin, MatteoSilvestri, Francesco TRANSPORTATION RESEARCH RECORD - -
MISSH: Fast Hashing of Multiple Spaced Seeds 2024 Pizzi, CinziaComin, Matteo + IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS - -
USTAR2: Fast and Succinct Representation of k-mer Sets Using De Bruijn Graphs 2024 Rossignolo, EnricoComin, Matteo - - Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2024)
Enhanced Compression of k-Mer Sets with Counters via de Bruijn Graphs 2024 Rossignolo, EnricoComin, Matteo JOURNAL OF COMPUTATIONAL BIOLOGY - -
ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs 2023 Cavattoni, MargheritaComin, Matteo JOURNAL OF COMPUTATIONAL BIOLOGY - -
Efficient Hashing of Multiple Spaced Seeds with Application 2023 Pizzi, CinziaComin, Matteo + - - Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2023) - Volume 3: BIOINFORMATICS
USTAR: Improved Compression of k-mer Sets with Counters Using de Bruijn Graphs 2023 Rossignolo, EnricoComin, Matteo - LECTURE NOTES IN COMPUTER SCIENCE Bioinformatics Research and Applications. ISBRA 2023
Efficient k-mer Indexing with Application to Mapping-free SNP Genotyping 2022 Andreace, FComin, M + - - Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies - BIOINFORMATICS
SPRISS: Approximating Frequent K-mers by Sampling Reads, and Applications 2022 Santoro, DiegoPellegrina, LeonardoComin, MatteoVandin, Fabio BIOINFORMATICS - -
Comparison of microbiome samples: methods and computational challenges 2021 Matteo CominBarbara Di CamilloCinzia PizziFabio Vandin BRIEFINGS IN BIOINFORMATICS - -
MetaProb 2: Improving Unsupervised Metagenomic Binning with Efficient Reads Assembly Using Minimizers 2021 Andreace, F.Pizzi, C.Comin, M. - LECTURE NOTES IN ARTIFICIAL INTELLIGENCE Lecture Notes in Computer Science
K2Mem: Discovering Discriminative K-mers from Sequencing Data for Metagenomic Reads Classification 2021 Storato D.Comin M. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS - -
Special Issue of the 1st International Applied Bioinformatics Conference (iABC'21) 2021 Comin, Matteo + JOURNAL OF INTEGRATIVE BIOINFORMATICS - -
Boosting Metagenomic Classification with Reads Overlap Graphs 2021 Cavattoni M.Comin M. - LECTURE NOTES IN ARTIFICIAL INTELLIGENCE Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
MetaProb 2: Metagenomic Reads Binning Based on Assembly Using Minimizers and K-Mers Statistics 2021 Andreace, FrancescoPizzi, CinziaComin, Matteo JOURNAL OF COMPUTATIONAL BIOLOGY - -
Fast alignment of reads to a variation graph with application to SNP detection 2021 Comin, Matteo + JOURNAL OF INTEGRATIVE BIOINFORMATICS - -
Iterative Spaced Seed Hashing: Closing the Gap between Spaced Seed Hashing and k-mer Hashing 2020 Pizzi C.Comin M. + JOURNAL OF COMPUTATIONAL BIOLOGY - -
Improving Metagenomic Classification Using Discriminative k-mers from Sequencing Data 2020 Storato D.Comin M. - LECTURE NOTES IN ARTIFICIAL INTELLIGENCE Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Indexing k-mers in linear space for quality value compression 2019 Shibuya Y.Comin M. JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY - -
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing 2019 Pizzi C.Comin M. + - LECTURE NOTES IN ARTIFICIAL INTELLIGENCE Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Better quality score compression through sequence-based quality smoothing 2019 Shibuya, YoshihiroComin, Matteo BMC BIOINFORMATICS - -
MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage 2019 Qian, JiaComin, Matteo BMC BIOINFORMATICS - -
Benchmarking of alignment-free sequence comparison methods 2019 Comin, Matteo + GENOME BIOLOGY - -
Indexing k-mers in linear-space for quality value compression 2019 SHIBUYA, YOSHIHIROComin M. - - BIOINFORMATICS 2019 - 10th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 12th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2019
FSH: Fast spaced seed hashing exploiting adjacent hashes 2018 Girotto, SamueleComin, MatteoPizzi, Cinzia ALGORITHMS FOR MOLECULAR BIOLOGY - -
Data-driven smart bike-sharing system by implementing machine learning algorithms 2018 Qian, JiaComin, Matteo + - - Proceedings - 2018 6th International Conference on Enterprise Systems, ES 2018
Efficient computation of spaced seed hashing with block indexing 2018 Girotto S.Comin M.Pizzi C. BMC BIOINFORMATICS - -
Fast and sensitive classification of short metagenomic reads with SKraken 2018 QIAN, JIAMarchiori, DavideComin, Matteo - - 10th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC
SKraken: Fast and Sensitive Classification of Short Metagenomic Reads based on Filtering Uninformative k-mers 2017 COMIN, MATTEOMARCHIORI, DAVIDE - - Proceedings of the 10th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 3: BIOINFORMATICS,
Metagenomic reads binning with spaced seeds 2017 GIROTTO, SAMUELECOMIN, MATTEOPIZZI, CINZIA THEORETICAL COMPUTER SCIENCE - -
Assembly-free techniques for NGS data 2017 Comin, MatteoSCHIMD, MICHELE - - Algorithms for Next-Generation Sequencing Data: Techniques, Approaches, and Applications
Binning metagenomic reads with probabilistic sequence signatures based on spaced seeds 2017 Girotto, SamueleComin, MatteoPizzi, Cinzia - - 2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2017
Fast spaced seed hashing 2017 GIROTTO, SAMUELECOMIN, MATTEOPIZZI, CINZIA LEIBNIZ INTERNATIONAL PROCEEDINGS IN INFORMATICS - Leibniz International Proceedings in Informatics, LIPIcs
Higher recall in metagenomic sequence classification exploiting overlapping reads 2017 Girotto, SamueleComin, MatteoPizzi, Cinzia BMC GENOMICS - -
On the comparison of regulatory sequences with multiple resolution Entropic Profiles 2016 COMIN, MATTEOANTONELLO, MORRIS BMC BIOINFORMATICS - -
Fast comparison of genomic and meta-genomic reads with alignment-free measures based on quality values 2016 COMIN, MATTEOSCHIMD, MICHELE BMC MEDICAL GENOMICS - -
Higher recall in metagenomic sequence classification exploiting Overlapping Reads 2016 GIROTTO, SAMUELECOMIN, MATTEOPIZZI, CINZIA - - 2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2016
MetaProb: Accurate metagenomic reads binning based on probabilistic sequence signatures 2016 GIROTTO, SAMUELEPIZZI, CINZIACOMIN, MATTEO BIOINFORMATICS - -
Clustering of reads with alignment-free measures and quality values 2015 COMIN, MATTEOLEONI, ANDREASCHIMD, MICHELE ALGORITHMS FOR MOLECULAR BIOLOGY - -
Fast Alignment-free Comparison for Regulatory Sequences using Multiple Resolution Entropic Profiles 2015 ANTONELLO, MORRISCOMIN, MATTEO - - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms,
Alignment-Free Measures for Whole-Genome Comparison 2015 COMIN, MATTEOVERZOTTO, DAVIDE - - Pattern Recognition in Computational Molecular Biology: Techniques and Approaches
Comparing, ranking, and filtering motifs with character classes: Application to biological sequences analysis 2014 Comin M.Verzotto D. - - Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data
Fast Entropic Profiler: An Information Theoretic Approach for the Discovery of Patterns in Genomes 2014 COMIN, MATTEOANTONELLO, MORRIS IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS - -
Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns 2014 COMIN, MATTEOSCHIMD, MICHELE BMC BIOINFORMATICS - -
Pattern Recognition in Bioinformatics 2014 COMIN, MATTEO + - - -
Beyond fixed-resolution alignment-free measures for mammalian enhancers sequence comparison 2014 COMIN, MATTEO + IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS - -
Parallel Continuous Flow: A Parallel Suffix Tree Construction Tool for Whole Genomes 2014 COMIN, MATTEO + JOURNAL OF COMPUTATIONAL BIOLOGY - -
QCluster: Extending Alignment-Free Measures with Quality Values for Reads ClusteringAlgorithms in Bioinformatics 2014 COMIN, MATTEOLEONI, ANDREASCHIMD, MICHELE - - Lecture Notes in Computer ScienceAlgorithms in Bioinformatics
Protein Structure Comparison, High Performance Computing 2013 COMIN, MATTEO + - - Encyclopedia of System Biology
Ultrametric networks: a new tool for phylogenetic analysis 2013 COMIN, MATTEO + ALGORITHMS FOR MOLECULAR BIOLOGY - -
Mostrati risultati da 1 a 50 di 83
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