In the liquid–liquid phase separation of proteins, dense liquid droplets often form within the dilute phase below the critical concentration. The resulting size distribution of these precritical droplets can be described by a scale-invariant distribution, which is characterized by an increasing average as the concentration approaches from below the critical value. This phenomenon can be leveraged for the quantitative estimation of the critical concentration. Here, to facilitate applications of this approach, we present the DropFit web server (https://www-cohsoftware.ch.cam.ac.uk/index.php/dropfit). DropFit can be used to estimate the critical concentration using experimental data on the length, area, or volume of the precritical droplets, which are taken away from the critical concentration and thus be more accurate and reproducible. We anticipate that the accurate value of the critical concentration under different experimental conditions will help understand the contributions from different macromolecules to the formation of protein condensates, and to investigate the perturbations that lead to pathological processes through the disruption of membraneless organelles.

DropFit: Determination of the Critical Concentration for Protein Liquid-Liquid Phase Separation

Fuxreiter, Monika
;
2025

Abstract

In the liquid–liquid phase separation of proteins, dense liquid droplets often form within the dilute phase below the critical concentration. The resulting size distribution of these precritical droplets can be described by a scale-invariant distribution, which is characterized by an increasing average as the concentration approaches from below the critical value. This phenomenon can be leveraged for the quantitative estimation of the critical concentration. Here, to facilitate applications of this approach, we present the DropFit web server (https://www-cohsoftware.ch.cam.ac.uk/index.php/dropfit). DropFit can be used to estimate the critical concentration using experimental data on the length, area, or volume of the precritical droplets, which are taken away from the critical concentration and thus be more accurate and reproducible. We anticipate that the accurate value of the critical concentration under different experimental conditions will help understand the contributions from different macromolecules to the formation of protein condensates, and to investigate the perturbations that lead to pathological processes through the disruption of membraneless organelles.
2025
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11577/3586503
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