In the last few years, we have witnessed a substantial improvement in the efficiency of DNA sequencing techniques with the advent of 10X-Visium, a new technology that is capable of providing the expression of tens of thousands of genes inside thousands of cells from a tissue sample. From a statistical perspective, this technology represents an astonishing step forward in the analysis of single cell data, as it gives access to a huge amount of information inaccessible to us until now. In this paper, we apply some innovative statistical methods that cluster both the rows and the columns of a data matrix to a human brain tissue sample processed with 10X-Visium. This operation is known as co-clustering and aims to detect groups of genes whose expression activity is similar in some specific areas of the brain tissue.

Co-clustering Models for Spatial Transciptomics: Analysis of a Human Brain Tissue Sample

Andrea Sottosanti;Davide Risso
2021

Abstract

In the last few years, we have witnessed a substantial improvement in the efficiency of DNA sequencing techniques with the advent of 10X-Visium, a new technology that is capable of providing the expression of tens of thousands of genes inside thousands of cells from a tissue sample. From a statistical perspective, this technology represents an astonishing step forward in the analysis of single cell data, as it gives access to a huge amount of information inaccessible to us until now. In this paper, we apply some innovative statistical methods that cluster both the rows and the columns of a data matrix to a human brain tissue sample processed with 10X-Visium. This operation is known as co-clustering and aims to detect groups of genes whose expression activity is similar in some specific areas of the brain tissue.
2021
Book of Short Papers SIS 2021
SIS 2021
9788891927361
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11577/3554183
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