Righelli, Dario
Righelli, Dario
Dipartimento di Biologia - DiBio
Curated single cell multimodal landmark datasets for R/Bioconductor
2023 Eckenrode, Kelly B; Righelli, Dario; Ramos, Marcel; Argelaguet, Ricard; Vanderaa, Christophe; Geistlinger, Ludwig; Culhane, Aedin C; Gatto, Laurent; Carey, Vincent; Morgan, Martin; Risso, Davide; Waldron, Levi
Designing spatial transcriptomic experiments
2023 Righelli, Dario; Sottosanti, Andrea; Risso, Davide
Dietary Fatty Acids Contribute to Maintaining the Balance between Pro-Inflammatory and Anti-Inflammatory Responses during Pregnancy
2023 Policastro, V.; Righelli, D.; Rava, L.; Vernocchi, P.; Bianchi, M.; Vallone, C.; Signore, F.; Manco, M.
In PD-1+ human colon cancer cells NIVOLUMAB promotes survival and could protect tumor cells from conventional therapies
2022 Ierano, C.; Righelli, D.; D'Alterio, C.; Napolitano, M.; Portella, L.; Rea, G.; Auletta, F.; Santagata, S.; Trotta, A. M.; Guardascione, G.; Liotti, F.; Prevete, N.; Maiolino, P.; Luciano, A.; Barbieri, A.; Di Mauro, A.; Roma, C.; Esposito Abate, R.; Tatangelo, F.; Pacelli, R.; Normanno, N.; Melillo, R. M.; Scala, S.
SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor
2022 Righelli, Dario; Weber, Lukas M; Crowell, Helena L; Pardo, Brenda; Collado-Torres, Leonardo; Ghazanfar, Shila; Lun, Aaron T L; Hicks, Stephanie C; Risso, Davide
Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics (Genome Biology, (2021), 22, 1, (220), 10.1186/s13059-021-02433-9)
2021 Cao, K. -A. L.; Abadi, A. J.; Davis-Marcisak, E. F.; Hsu, L.; Arora, A.; Coullomb, A.; Deshpande, A.; Feng, Y.; Jeganathan, P.; Loth, M.; Meng, C.; Mu, W.; Pancaldi, V.; Sankaran, K.; Righelli, D.; Singh, A.; Sodicoff, J. S.; Stein-O'Brien, G. L.; Subramanian, A.; Welch, J. D.; You, Y.; Argelaguet, R.; Carey, V. J.; Dries, R.; Greene, C. S.; Holmes, S.; Love, M. I.; Ritchie, M. E.; Yuan, G. -C.; Culhane, A. C.; Fertig, E.
Easyreporting simplifies the implementation of Reproducible Research layers in R software
2021 Righelli, D.; Angelini, C.
Psychological interventions during COVID pandemic: Telehealth for individuals with cystic fibrosis and caregivers
2021 Graziano, S.; Boldrini, F.; Righelli, D.; Milo, F.; Lucidi, V.; Quittner, A.; Tabarini, P.
ROBustness In Network (robin): an R Package for Comparison and Validation of Communities
2021 Policastro, V.; Righelli, D.; Carissimo, A.; Cutillo, L.; de Feis, I.
Single cell multi-omic analysis identifies a Tbx1-dependent multilineage primed population in murine cardiopharyngeal mesoderm
2021 Nomaru, H.; Liu, Y.; De Bono, C.; Righelli, D.; Cirino, A.; Wang, W.; Song, H.; Racedo, S. E.; Dantas, A. G.; Zhang, L.; Cai, C. -L.; Angelini, C.; Christiaen, L.; Kelly, R. G.; Baldini, A.; Zheng, D.; Morrow, B. E.
Chromatin and Transcriptional Response to Loss of TBX1 in Early Differentiation of Mouse Cells
2020 Cirino, A.; Aurigemma, I.; Franzese, M.; Lania, G.; Righelli, D.; Ferrentino, R.; Illingworth, E.; Angelini, C.; Baldini, A.
Rates of depression and anxiety in Italian patients with cystic fibrosis and parent caregivers: Implementation of the Mental Health Guidelines
2020 Graziano, S.; Span(`o), B.; Majo, F.; Righelli, D.; Vincenzina, L.; Quittner, A.; Tabarini, P.
Effects of Lumacaftor/Ivacaftor on physical activity and exercise tolerance in three adults with cystic fibrosis
2019 Savi, D.; Schiavetto, S.; Simmonds, N. J.; Righelli, D.; Palange, P.
HiCeekR: A Novel Shiny App for Hi-C Data Analysis
2019 Di Filippo, L.; Righelli, D.; Gagliardi, M.; Matarazzo, M. R.; Angelini, C.
DEScan2
2018 Righelli, Dario; Koberstein, John; Gomes, Bruce; Zhang, Nancy; Angelini, Claudia; Peixoto, Lucia; Risso, Davide
A novel shiny platform for the geo-spatial analysis of large amount of patient data
2017 Guarino, F; Russo, Ma; Franzese, M; Righelli, D; Improta, G; Angelini, C; Triassi, M
Distinct antigen delivery systems induce dendritic cells’ divergent transcriptional response: New insights from a comparative and reproducible computational analysis
2017 Costa, V.; Righelli, D.; Russo, F.; De Berardinis, P.; Angelini, C.; D'Apice, L.
Advancements in RNASeqGUI towards a Reproducible Analysis of RNA-Seq Experiments
2016 Russo, F.; Righelli, D.; Angelini, C.
Advantages and limits in the adoption of reproducible research and R-tools for the analysis of omic data
2016 Russo, F.; Righelli, D.; Angelini, C.
Reproducible Research in the era of Next Generation Sequencing: current approaches, examples and future perspectives
2015 Angelini, Claudia; Righelli, Dario; Russo, Francesco